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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGATTTTGTTCGTTCAAACGAGCTGCAGGAGGGTGATTTCATTGTGATCTACTCCGATATCAAGTCAGGCAAATATgtaatgttcatccatcattgcccttcccacttctttcgagtactctttaactcaactcagttggatgtgattttgagtgccaataagctatatatagttg...

Basic information

species Oryza sativa
transcript LOC_Os01g68370.4
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g68370.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G133398_T03 (Zea mays), 5'ss of exon 5
GTGATTTTGTTCGTTCAAACGAGCTGCAGGAGGGTGATTTCATTGTGATCTACTCCGATATCAAGTCAGGCAAATATgtaatgttcatccatcattgcccttcccacttctttcgagtactctttaactcaactcagttggatgtgattttgagtgccaataagctatatatagttg--
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GGGAATTTGTTCGTTCCAACGAGCTTCAGGAGGGGGATTTCATAGTGATCTACTCCGATGTCAAGTCGGGCAAATATgta-tgttcttctattgccgactatttccttgctacataatgctcgtttttctggtccatatgcctgc-atcattagtcaactcaaacgtgttgtcgtcctt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218483850|gb|FG959896.1|FG959896
EST:     AGGAGGGTGATTTCATTGTGATCTACTCCGATATCAAGTCAGGCAAATAT                         CTGATACGTGGTGTGAAGGTGAGGCGCGCGGCGCAGGAGCAAGGCAACTCG
genomic: AGGAGGGTGATTTCATTGTGATCTACTCCGATATCAAGTCAGGCAAATATgtaatgttca ... ttattagcagCTGATACGTGGTGTGAAGGTGAGGCGCGCGGCGCAGGAGCAAGGCAACTCG