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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTGAGCCATACGCAACTCTGTATCATTGGGATCTTCCACATAATCTTCAGCAGACTGTGGGTGGTTGGCTTTCTGATAAGATCGTgtaagacactacgacatctttactttgcactatgatttaaaaagtcatttaaacagccatataaccaatttataagggatattattattaagatgagtgatttagtttaaagtgcttgcaaacttgatttggtttatgtgagtttcttactgtcaaaatatcccag

Basic information

species Oryza sativa
transcript LOC_Os01g67220.3
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g67220.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G044092_T01 (Zea mays), 5'ss of exon 6
GTATTGAGCCATACGCAACTCTGTATCATTGGGATCTTCCACATAATCTTCAGCAGACTGTGGGTGGTTGGCTTTCTGATAAGATCGTgtaagacactac-gacatctttactttgcactatgatttaaaaagtcatttaaacagccatataaccaatttataagggatattattattaagatgagtgatttagtttaaagtgcttgcaaacttgattt-----ggtttatgtgagtttcttactgtcaaa-atatcccag
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GTATTGAGCCTTACGCAACTCTATATCATTGGGATCTTCCAAACAATCTTCAGAAGACTCTGGGGGGCTGGATTTCTGACAAGATTGTgtaagtcactgcaggcatctttagtgtgcagtatgattaccaaagttttcttgacgcttaaacggatgatt-acatatgagattcttttcgagacaattt-tttatccagaagtggttgcaa-cttgattttctgtagtttatatgagtttctcaccataaaacatatcccag

upper sequence: LOC_Os01g67220.1 (Oryza sativa), 5'ss of exon 6
lower sequence: AC155376.2_FGT005 (Zea mays), 5'ss of exon 6
GTATTGAGCCATACGCAACTCTGTATCATTGGGATCTTCCACATAATCTTCAGCAGACTGTGGGTGGTTGGCTTTCTGATAAGATCGTgtaagacactac-gacatctttactttgcactatgatttaa--------aaagtcatttaaacagccatataaccaatttataagggatattattattaagatgagtgatttagtttaaa-gtgcttgcaaacttgatttg--gtttatgtgagtttcttactgtcaaaatatcccag
|||||||||| |||||||| ||||||||||||||||||||| | ||||||||  | ||| |||| || ||| ||||||| ||||| ||||||| |||| | | |||||| |   || | ||||| |  |         ||||  | | ||||  || || |    || | |   || ||| || |  |    |    |||  || ||| ||| |||||  |||||||||  |||| |  |||||||| ||  | ||||||||| ||
GTATTGAGCCTTACGCAACACTGTATCATTGGGATCTTCCAAACAATCTTCAAAAAACTCTGGGGGGCTGGATTTCTGACAAGATTGTgtaagccactgcaggcatcttaagcgtgtagtatgaatgtatgattaccgaagttttcttaacacgcaaatgaatggtt-acatatgagattcttctcgactcaacctttttgtttcaaaagtgtttgcag-cttgatttgctgtttttacgagtttctcaccataaaaatatcctag