1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AACTGATTTGAGGGACTGGCATGAGTTTCCACAGTGGAAGCCACAGATTTTAGAACGTCAAGTCCCATCATTGGAGCCTGAAGGAGTTGACCTTTTATCGgtaagaaaactgatctatactggttttccattttgtcactattcgaaattatttaggctgtaagataatttgaagttctccctaatttaatagcttcaaa...
species | Oryza sativa |
transcript | LOC_Os01g67160.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TAGAACGTCAAGTCCCATCATTGGAGCCTGAAGGAGTTGACCTTTTATCG AANATGCTCCAGTATAACCCAGCAAATCGGATCTCAGCAAAGGCTGCTATGEST: gi|89175571|gb|CI042592.1|CI042592
genomic: TAGAACGTCAAGTCCCATCATTGGAGCCTGAAGGAGTTGACCTTTTATCGgtaagaaaac ... tttcttgcagAAAATGCTCCAGTATAACCCAGCAAATCGGATCTCAGCAAAGGCTGCTATG
EST: TAGAACGTCAAGTCCCATCATTGGAGCCTGAAGGAGTTGACCTTTTATCG AAAATGCTCCAGTATAACCCAGCAAATCGGATCTCAGCAAAGGCTGCTATGEST: gi|88484525|gb|CI421796.1|CI421796
genomic: TAGAACGTCAAGTCCCATCATTGGAGCCTGAAGGAGTTGACCTTTTATCGgtaagaaaac ... tttcttgcagAAAATGCTCCAGTATAACCCAGCAAATCGGATCTCAGCAAAGGCTGCTATG
EST: TAGAACGTCAAGTCCCATCATTGGAGCCTGAAGGAGTTGACCTTTTATCG AAAATGCTCCAGTATAACCCAGCAAATCGGATCTCAGCAAAGGCTGCTATGEST: gi|88286317|gb|CI522617.1|CI522617
genomic: TAGAACGTCAAGTCCCATCATTGGAGCCTGAAGGAGTTGACCTTTTATCGgtaagaaaac ... tttcttgcagAAAATGCTCCAGTATAACCCAGCAAATCGGATCTCAGCAAAGGCTGCTATG
EST: TAGNACGTCAAGTCCCATCATTGGAGCCTGAAGGAGTTGACCTTTTATCG AAAATGCTCCAGTATAACCCAGCAAATCGGATCTCAGCAAAGGCTGCTATGEST: gi|88541396|gb|CI470665.1|CI470665
genomic: TAGAACGTCAAGTCCCATCATTGGAGCCTGAAGGAGTTGACCTTTTATCGgtaagaaaac ... tttcttgcagAAAATGCTCCAGTATAACCCAGCAAATCGGATCTCAGCAAAGGCTGCTATG
EST: GAAGGAGTTGACCTTTTATCG AAAATGCTCCAGTATAACCCAGCAAATCGGATCTCAGCAAAGGCTGCTATG
genomic: GAAGGAGTTGACCTTTTATCGgtaagaaaac ... tttcttgcagAAAATGCTCCAGTATAACCCAGCAAATCGGATCTCAGCAAAGGCTGCTATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACTGATTTGAGGGACTGGCATGAGTTTCCACAGTGGAAGCCACAGATTTTAGAACGTCAAGTCCCATCATTGGAGCCTGAAGGAGTTGACCTTTTATCGgtaagaaaactgatctatactggttttccattttgtcactattcgaaattatttaggctgtaagataatttgaagttctccctaatttaatagcttcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG