1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TACAATTGAGGGCATAAACCAGGCTGGCTACTTTCAGACGTGGCTGTTTGCAGTGATTTCAATTACATGCATAGCTGTCCAGTTAGTTTACCTGAACAAGgtacgctctattcttgatcagtatgcacgataagaagttgttgacctgctagtccaatgcaacacctccttaacacaatagagacgaggttcacagagaa...
species | Oryza sativa |
transcript | LOC_Os01g65310.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CAGTGATTTCAATTACATGCATAGCTGTCCAGTTAGTTTACCTGAACAAG GCGCTGGATACTTTCAATGCAGCAGTTGTTTCACCCATCTATTATGCCATGEST: gi|87029382|gb|CI250315.1|CI250315
genomic: CAGTGATTTCAATTACATGCATAGCTGTCCAGTTAGTTTACCTGAACAAGgtacgctcta ... aaatttgcagGCGCTGGATACTTTCAATGCAGCAGTTGTTTCACCCATCTATTATGCCATG
EST: CATGCATAGCTGTCCAGTTAGTTTACCTGAACAAG GCGCTGGATACTTTCAATGCAGCAGTTGTTTCACCCATCTATTATGCCATGEST: gi|29676149|gb|CB672424.1|CB672424
genomic: CATGCATAGCTGTCCAGTTAGTTTACCTGAACAAGgtacgctcta ... aaatttgcagGCGCTGGATACTTTCAATGCAGCAGTTGTTTCACCCATCTATTATGCCATG
EST: CAGTGATTTCAATTACATGCATAGCTGTCCAGTTAGTTTACCTGAACAAG GCGCTGGATACTTTCAATGCAGCAGTTGTTTCACCCATCTATTATGCCATGEST: gi|218484594|gb|FG954369.1|FG954369
genomic: CAGTGATTTCAATTACATGCATAGCTGTCCAGTTAGTTTACCTGAACAAGgtacgctcta ... aaatttgcagGCGCTGGATACTTTCAATGCAGCAGTTGTTTCACCCATCTATTATGCCATG
EST: CAGTGATTTCAATTACATGCATAGCTGTCCAGTTAGTTTACCTGAACAAG GCGCTGGATACTTTCAATACAGCAGTTGTTTCACCCATCTATTATGCCATG
genomic: CAGTGATTTCAATTACATGCATAGCTGTCCAGTTAGTTTACCTGAACAAGgtacgctcta ... aaatttgcagGCGCTGGATACTTTCAATGCAGCAGTTGTTTCACCCATCTATTATGCCATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACAATTGAGGGCATAAACCAGGCTGGCTACTTTCAGACGTGGCTGTTTGCAGTGATTTCAATTACATGCATAGCTGTCCAGTTAGTTTACCTGAACAAGgtacgctctattcttgatcagtatgcacgataagaagttgttgacctgctagtccaatgcaacacctccttaacacaatagagacgaggttcacagagaa
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