1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATAGCCGTCTGCGTGGACGATCCTGAGTACCGCCACTACAACGATCTCAGTGAGCTTTCGCCTCATCGCGTCCAGGAAATCCGGCGTTTCTTTGAAGACTgtatgttcctactagttctcaaatcgctgcactgaccaatgttttattcttcttcagctaactctgtagtttctgaacttattcag
species | Oryza sativa |
transcript | LOC_Os01g64670.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGAGCTTTCGCCTCATCGCGTCCAGGAAATCCGGCGTTTCTTTGAAGACT ACAAGAAGAATGAAAACAAGGAGGTCGCCGTGAATGAGGTACTTCCTGTGAEST: gi|88206464|gb|CI206313.1|CI206313
genomic: TGAGCTTTCGCCTCATCGCGTCCAGGAAATCCGGCGTTTCTTTGAAGACTgtatgttcct ... acttattcagACAAGAAGAATGAAAACAAGGAGGTCGCCGTGAATGAGGTACTGCCTGTGA
EST: GGAAATCCGGCGTTTCTTTGAAGACT ACAAGAAGAATGAAAACAAGGAGGTCGCCGTGAATGAGGTACTGCCTGTGAEST: gi|218503045|gb|FG970333.1|FG970333
genomic: GGAAATCCGGCGTTTCTTTGAAGACTgtatgttcct ... acttattcagACAAGAAGAATGAAAACAAGGAGGTCGCCGTGAATGAGGTACTGCCTGTGA
EST: TGAGCTTTCGCCTCATCGCGTCCAGGAAATCCGGCGTTTCTTTGAAGACT ACAAGACGAGTGAAAACAAGGAGGTCGCCGTGAATGAGGTACTTCCTGTGAEST: gi|88250730|gb|CI348960.1|CI348960
genomic: TGAGCTTTCGCCTCATCGCGTCCAGGAAATCCGGCGTTTCTTTGAAGACTgtatgttcct ... acttattcagACAAGAAGAATGAAAACAAGGAGGTCGCCGTGAATGAGGTACTGCCTGTGA
EST: TGAGCTTTCGCCTCATCGCGTCCAGGAAATCCGGCGTTTCTTTGAAGACT ACAAGAAGAATGAAAACAAGGAGGTCGCCGTGAATGAGGTACTGCCTGTGAEST: gi|218499150|gb|FG960130.1|FG960130
genomic: TGAGCTTTCGCCTCATCGCGTCCAGGAAATCCGGCGTTTCTTTGAAGACTgtatgttcct ... acttattcagACAAGAAGAATGAAAACAAGGAGGTCGCCGTGAATGAGGTACTGCCTGTGA
EST: TGAGCTTTCGCCTCATCGGGTCCAGGAAATCCGGCGTTTCTTTGAAGACT ACAAGAAGAATGA
genomic: TGAGCTTTCGCCTCATCGCGTCCAGGAAATCCGGCGTTTCTTTGAAGACTgtatgttcct ... acttattcagACAAGAAGAATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAGCCGTCTGCGTGGACGATCCTGAGTACCGCCACTACAACGATCTCAGTGAGCTTTCGCCTCATCGCGTCCAGGAAATCCGGCGTTTCTTTGAAGACTgtatgttcctactagttctcaaatcgctgcactgaccaatgttttattcttcttcagctaactctgtagtttctgaacttattcag
- - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA