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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGATGAAAATCTATTGAGAAAAGTGTTTGAACTAATGTATGAAAATGAGTTGCTAGATCTTCCATATGCTCCTGATGTTGGTGACTACTTAGTCTGTGAGgtaacattattgaatcgttgttattttgtgtgtgtttattttctaaatggttatccaactgctaattttgttccag

Basic information

species Oryza sativa
transcript LOC_Os01g63820.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g63820.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G019274_T01 (Zea mays), 5'ss of exon 9
CGATGAAAATCTATTGAGAAAAGTGTTTGAACTAATGTATGAAAATGAGTTGCTAGATCTTCCATATGCTCCTGATGTTGGTGACTACTTAGTCTGTGAGgtaacattattgaatcgttgttattttgtgtgtgtttattttctaaatggttat-ccaactgctaattttgttccag
 ||||| |||||| |||| |||||||||||||||   |||||||||| |||  | |||||  |||||||||| |||||||||||||| ||||| || ||||||  | ||||       || | |       || | | |||||| ||   | || | | || | |||    || |||
TGATGAGAATCTACTGAGGAAAGTGTTTGAACTATACTATGAAAATGGGTTATTGGATCTATCATATGCTCCAGATGTTGGTGACTATTTAGTTTGCGAGgtattaatattctgaatatggtctccctcaagtttattttttctgaaacttaatgctaccttccaatgcctttacag

upper sequence: LOC_Os01g63820.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G019274_T01 (Zea mays), 5'ss of exon 6
CGATGAAAATCTATTGAGAAAAGTGTTTGAACTAATGTATGAAAATGAGTTGCTAGATCTTCCATATGCTCCTGATGTTGGTGACTACTTAGTCTGTGAGgtaacattattgaatcgttgttattttgtgtgtgtttattttctaaatggttat-ccaactgctaattttgttccag
 ||||| ||| || |||| |||||||||||||||   |||||||||| |||  | |||||  |||||||||| |||||||||||||| |||||||| ||||||  | ||||       || | |       || | | |||||| ||   | || | | || | ||||   || |||
TGATGAGAATATACTGAGGAAAGTGTTTGAACTATACTATGAAAATGGGTTATTGGATCTATCATATGCTCCAGATGTTGGTGACTATTTAGTCTGCGAGgtattaatattctgaatatggtctccctcaagtttattttttctgaaacttaatgctaccttccaattcctttacag

upper sequence: LOC_Os01g63820.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G039650_T02 (Zea mays), 5'ss of exon 6
CGATGAAAATCTATTGAGAAAAGTGTTTGAACTAATGTATGAAAATGAGTTGCTAGATCTTCCATATGCTCCTGATGTTGGTGACTACTTAGTCTGTGAGgtaacattattgaatcgttgttattttgtgtgt------gtttatttt--ctaaatggttat-ccaactgctaattttgttccag
 ||||| ||||||||||| |||||||| ||||||   |||||||||| |||  | ||||||||||||||||| |||||||||||||| |||||||| ||||||  | ||||  |    || | |       ||      |||||||||  || ||   | || | | || | |||||   | |||
TGATGAGAATCTATTGAGGAAAGTGTTCGAACTATACTATGAAAATGGGTTATTGGATCTTCCATATGCTCCAGATGTTGGTGACTATTTAGTCTGCGAGgtattaatattctaaatatggtctccctcaagtagtcaagtttattttttctgaaacttaatgctaccttccaatttctctacag