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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGTTGGGGCTTACACCCAAGGGATGGGTTATATGCAACCTCAGgtaacctagcactagcatagtatcatttgtcagcacaatgctatggttcatccttgaagctaaacaagatataaagtaataatgcacattcaactttttttttctagctgacactgtttatgccattacacgtgcag

Basic information

species Oryza sativa
transcript LOC_Os01g61810.3
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|157650082|gb|EX449716.1|EX449716
EST:     ATGGTTGGGGCTTACACCCAAGGGATGGGTTATATGCAACCTCAG                         TATCATAATGGGGACACCTAAAGATGAGGACAGTGAAAATTTTCAGTAACT
genomic: ATGGTTGGGGCTTACACCCAAGGGATGGGTTATATGCAACCTCAGgtaacctagc ... acacgtgcagTATCATAATGGGGACACCTAAAGATGAGGACAGTGAAAATTTTCAGTAACT
EST: gi|218487228|gb|FG968027.1|FG968027
EST:     ATGGTTGGGGCTTACACCCAAGGGATGGGTTATATGCAACCTCAG                         TATCATAATGGGGACACCTAAAGATGAGGACAGTGAAAATTTTCAGTAACT
genomic: ATGGTTGGGGCTTACACCCAAGGGATGGGTTATATGCAACCTCAGgtaacctagc ... acacgtgcagTATCATAATGGGGACACCTAAAGATGAGGACAGTGAAAATTTTCAGTAACT
EST: gi|88457008|gb|CI529209.1|CI529209
EST:     CCAAGGGATGGGTTATATGCAACCTCAG                         TATCATAATGGGGACACCTAAAGATGAGGACAGTGAAAATTTTCAGTAACT
genomic: CCAAGGGATGGGTTATATGCAACCTCAGgtaacctagc ... acacgtgcagTATCATAATGGGGACACCTAAAGATGAGGACAGTGAAAATTTTCAGTAACT
EST: gi|25797854|gb|CA753815.1|CA753815
EST:     ATGGTTGGGGCTTACACCCAAGGGATGGGTTATATGCAACCTCAG                         TATCATAATGGGGACACCTAAAGATGAGGACAGTGAAAATTTTCAGTAACT
genomic: ATGGTTGGGGCTTACACCCAAGGGATGGGTTATATGCAACCTCAGgtaacctagc ... acacgtgcagTATCATAATGGGGACACCTAAAGATGAGGACAGTGAAAATTTTCAGTAACT
EST: gi|1631561|gb|C19290.1|C19290
EST:     ATGGTTGGGGCTTACACCCAAGGGATGGGTTATATGCAACCTCAG                         TATCATAATGGGGACACCTAAAGATGAGGACAGTGAAAATTTTCAGTAACT
genomic: ATGGTTGGGGCTTACACCCAAGGGATGGGTTATATGCAACCTCAGgtaacctagc ... acacgtgcagTATCATAATGGGGACACCTAAAGATGAGGACAGTGAAAATTTTCAGTAACT
EST: gi|88455291|gb|CI519312.1|CI519312
EST:     CCAAGGGATGGGTTATATGCAACCTCAG                         TATCATAATGGGGACACCTAAAGATGAGGACAGTGAAAATTTTCAGTAACT
genomic: CCAAGGGATGGGTTATATGCAACCTCAGgtaacctagc ... acacgtgcagTATCATAATGGGGACACCTAAAGATGAGGACAGTGAAAATTTTCAGTAACT