1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATACTGGAAAAGTCGAAACCAGTGATTGTTGCAGGAGACCTTAACTGTGCTCGTCAAAGCATTGACATTCACAATCCTCCAgtgagtaactctcttttctttttgaacaatgtctccctccaatttgttctgtactatcattacatcattcgagagcagagtgcttaggttgtttcagaatttcatatatcagtacacagatcctcattctgaaccctttttcag
species | Oryza sativa |
transcript | LOC_Os01g58690.3 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CAGGAGACCTTAACTGTGCTCGTCAAAGCATTGACATTCACAATCCTCCA GCAAAAACCAAGTCTGCAGGTTTCACAATTGAAGAGAGAGAGTCATTTGAGEST: gi|27546396|gb|CA764589.2|CA764589
genomic: CAGGAGACCTTAACTGTGCTCGTCAAAGCATTGACATTCACAATCCTCCAgtgagtaact ... cctttttcagGCAAAAACCAAGTCTGCAGGTTTCACAATTGAAGAGAGAGAGTCATTTGAG
EST: CAGGAGACCTTAACTGTGCTCGTCAAAGCATTGACATTCACAATCCTNCA GCAAAAACCAAGTCTGGCAGGTTTCACAATTGGAAGAGAGAGAGTCATTTGEST: gi|66928154|gb|CX115002.1|CX115002
genomic: CAGGAGACCTTAACTGTGCTCGTCAAAGCATTGACATTCACAATCCTCCAgtgagtaact ... cctttttcagGCAAAAACCAAGTCTG-CAGGTTTCACAATTG-AAGAGAGAGAGTCATTTG
EST: TCACAATCCTCCA GCAAAAACCAAGTCTGCAGGTTTCACCATTGAAGAGAGAGAGTCATTGGAGEST: gi|66927262|gb|CX114110.1|CX114110
genomic: TCACAATCCTCCAgtgagtaact ... cctttttcagGCAAAAACCAAGTCTGCAGGTTTCACAATTGAAGAGAGAGAGTCATTTGAG
EST: CAGGAGACCTTAACTGTGCTCGTCAAAGCATTGACATTCACAATCCTCCA GCAAAAACCAAGTCTGCAGGTTTCACAATTGAAGAGAGAGAGTCCTTTGAGEST: gi|8528070|gb|AU092885.1|AU092885
genomic: CAGGAGACCTTAACTGTGCTCGTCAAAGCATTGACATTCACAATCCTCCAgtgagtaact ... cctttttcagGCAAAAACCAAGTCTGCAGGTTTCACAATTGAAGAGAGAGAGTCATTTGAG
EST: CAGGAGACCTTAACTGTGCTCGTCAAAGCATTGACATTCACAATCCTCCA GCAAAAACCAAGTCTGCAGGTTTCACAATTGAAGAGAGAGAGTCATTTGAG
genomic: CAGGAGACCTTAACTGTGCTCGTCAAAGCATTGACATTCACAATCCTCCAgtgagtaact ... cctttttcagGCAAAAACCAAGTCTGCAGGTTTCACAATTGAAGAGAGAGAGTCATTTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATACTGGAAAAGTCGAAACCAGTGATTGTTGCAGGAGACCTTAACTGTGCTCGTCAAAGCATTGACATTCACAATCCTCCAgtgagtaactctcttttctttttgaacaatgtctccctccaatttgttctgtactatcattacatcattcgagagcagagtgcttaggttgtttcagaatttcatatatcagtacacagatcctcattctgaaccctttttcag
- - - - - - - - - - - - - - - - AGGAGA