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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAATGCTGGCAAAGGCTGTTGCTACTGAGTGTAAAACTACATTCTTCAACATTTCAGCATCATCAATTGTTAGCAAATGGCGTGgtatgtttctttgaacacctggtcctgaccccatctttcttttattgcacagaaaacaagttgtttttagctattcttttttgtagagttgtcctagttg...

Basic information

species Oryza sativa
transcript LOC_Os01g55260.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g55260.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G022777_T01 (Zea mays), 5'ss of exon 7
ACAATGCTGGCAAAGGCTGTTGCTACTGAGTGTAAAACTACATTCTTCAACATTTCAGCATCATCAATTGTTAGCAAATGGCGTGgtatg-tttctttgaaca---cctggtcctgaccccatctttcttttattgcacagaaaacaagttgtttttagctattcttttttgtagagttgtcctagttg
|||||||||||||| || || ||||||||||| ||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||  || |||  |||   ||||||   | |  || | ||||||| |   ||  |    |      ||| |||| |   ||  |||   |        |   
ACAATGCTGGCAAAAGCGGTCGCTACTGAGTGCAAAACCACCTTCTTCAACATTTCAGCATCATCAATTGTCAGCAAATGGCGTGgtatggcttttttacacaagtcctggttgcgtcttca-cattcttttctgttaccaatgtaattcaactttcagctgtcagttaatgtcatgaaacatatg---

upper sequence: LOC_Os01g55260.1 (Oryza sativa), 5'ss of exon 7
lower sequence: AT2G34560.1 (Arabidopsis thaliana), 5'ss of exon 7
ACAATGCTGGCAAAGGCTGTTGCTACTGAGTGTAAAACTACATTCTTCAACATTTCAGCATCATCAATTGTTAGCAAATGGCGTGgtatgtttctttgaac----acctggtcctgacccc-atctttcttttattgcacagaaaacaagttgtttttagctattcttttttgtagagttgtcctagttg
|| ||||| ||||||||||||||||| ||||| || || |||||||||||||| ||||| |||||  |||||||||||||| | |||    |  |||| ||    |  |  || | |||   |  |    |  | |    || | | ||     |||  ||| |||  | || |  ||            
ACTATGCTTGCAAAGGCTGTTGCTACAGAGTGCAATACAACATTCTTCAACATCTCAGCCTCATCTGTTGTTAGCAAATGGAGAGgtgaaatattttgtacctttatttactcttaaccatgaaataagatgcagtctttaggaga-aataaaatttgggcttttcaatgtttttcag------------

upper sequence: LOC_Os01g55260.1 (Oryza sativa), 5'ss of exon 7
lower sequence: Vv10s0003g03500.t01 (Vitis vinifera), 5'ss of exon 7
ACAATGCTGGCAAAGGCTGTTGCTACTGAGTGTAAAACTACATTCTTCAACATTTCAGCATCATCAATTGTTAGCAAATGGCGTGgtatgtttc--tttgaacacctggtcctgaccccatctttc-----ttttattgcacagaaaacaagttgtttttagctattcttttttgtagagttgtcctagttg
|| ||||| ||||||||||| || || ||||| ||||| ||||| ||||| ||||| ||||| ||  |||| ||||||||||| |||||||     ||  || |  |  |  ||| |   | |||      |  | |||| |    |||      |    | || |   || |  |   ||| ||       
ACTATGCTTGCAAAGGCTGTCGCAACCGAGTGCAAAACCACATTTTTCAATATTTCTGCATCCTCTGTTGTCAGCAAATGGCGAGgtatgtcagagttgaaagattttctaatgatcatgttttttgataatgctgttgctcgttcaacctagc-tacgaaactgtatcttctgattaggttctct------