1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AATTGCGAAGATAACCATTCATGATCAACATTCAGTGGGAGAATCTGCAACAATTAAGAACCATGACATCATGCTAAGTAACAAGgtgtgtatcagttattactcagcgacattttcttaaaagatcttatagatacccaaactacagcccttttgattttactacctactgattgtagtcatag...
species | Oryza sativa |
transcript | LOC_Os01g55170.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CATGCTAAGTAACAAG GTGCATGCTCTTGTTGAATATGAAACAGCAGAGGCAGCTGAGAAAGCTEST: gi|33794161|gb|CF322971.1|CF322971
genomic: CATGCTAAGTAACAAGgtgtgtatca ... ggttgtgcagGTGCATGCTCTTGTTGAATATGAAACAGCAGAGGCAGCTGAGAAAGCT
EST: TGGGAGAATCTGCAACAATTAAGAACCATGACATCATGCTAAGTAACAAG GTGCATGCTCTTGTTGAATATGAAACAGCAGAGGCAGCTGAGAAAGCTEST: gi|29640595|gb|CB645604.1|CB645604
genomic: TGGGAGAATCTGCAACAATTAAGAACCATGACATCATGCTAAGTAACAAGgtgtgtatca ... ggttgtgcagGTGCATGCTCTTGTTGAATATGAAACAGCAGAGGCAGCTGAGAAAGCT
EST: TTAAGAACCATGACATCATGCTAAGTAACAAG GTGCATGCTCTTGTTGAATATGAAACAGCAGAGGCAGCTGAGAAAGCTEST: gi|7378454|gb|AU088725.1|AU088725
genomic: TTAAGAACCATGACATCATGCTAAGTAACAAGgtgtgtatca ... ggttgtgcagGTGCATGCTCTTGTTGAATATGAAACAGCAGAGGCAGCTGAGAAAGCT
EST: CCATGACATNCATGCTAAGTNAACAAG GTGCATCCTCTTGTTGAATATGAAACAGCAGAGGCANCTGAGAAAGCT
genomic: CCATGACAT-CATGCTAAGT-AACAAGgtgtgtatca ... ggttgtgcagGTGCATGCTCTTGTTGAATATGAAACAGCAGAGGCAGCTGAGAAAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTGCGAAGATAACCATTCATGATCAACATTCAGTGGGAGAATCTGCAACAATTAAGAACCATGACATCATGCTAAGTAACAAGgtgtgtatcagttattactcagcgacattttcttaaaagatcttatagatacccaaactacagcccttttgattttactacctactgattgtagtcatag
- - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC