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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGATTTGCGCAAGCACTTGAGTAGGAAAGGGGCTCTGGAACCGTCATATGCAGTGAAATTAGCTCTTGATATTGCAAGgtttgcctatcatgacctgaatctcttggttctacttttttgttgctataatgaagactgatttgcagttctctctgaaatctaatag

Basic information

species Oryza sativa
transcript LOC_Os01g54480.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g54480.3 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G045366_T01 (Zea mays), 5'ss of exon 6
GGTGATTTGCGCAAGCACTTGAGTAGGAAAGGGGCTCTGGAACCGTCATATGCAGTGAAATTAGCTCTTGATATTGCAAGgtttgcctatcatgacctgaat----------ctct-tggttctacttttttgttgctataatgaaga-----ctgatttgcagttctctctgaaatctaatag
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GGTGACTTGCGCACTCACTTGAGTAAGAAAGGAGCTCTGCCACCATCATATGCTGTGAAGTTAGCTCTTGATATTGCAAGgtttgcctgccataacctggataagagataaactctgttggcctaatatgttgttgttatgaagtaaataaacctaacttgtgttcctttgtgaattgtaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163928081|gb|EG712985.1|EG712985
EST:     GGGGCTCTGGAACCGTCATATGCAGTGAAATTAGCTCTTGATATTGCAAG                         AGGGATGAATTATTTACA
genomic: GGGGCTCTGGAACCGTCATATGCAGTGAAATTAGCTCTTGATATTGCAAGgtttgcctat ... aatctaatagAGGGATGAATTATTTACA