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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAAGTTGCGAGGACAGAATTCACCAAGACTGGATTCTGATTCACCAGCAGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACAgtaagttgaacccacactcacctcatacacaaggaccaatctatttcaaatttgactaagtccatagacaaattagtttcatcaaatcaataattgaata...

Basic information

species Oryza sativa
transcript LOC_Os01g51840.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g51840.1 (Oryza sativa), 5'ss of exon 6
lower sequence: AC207628.4_FGT011 (Zea mays), 5'ss of exon 6
GCAAAGTTGCGAGGACAGAATTCACCAAGACTGGATTCTGATTCACCAGCAGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACAgtaagtt-gaacccacactcacctcatac----acaaggaccaatctatttcaaatttgactaagtccatagacaaattagtttcatcaaatcaataattgaata
|| || |||||||  ||||||||||| || ||||||||||||||| | ||||| | |||||| ||||| || ||||| ||||| |||||   |||||| |||||||| |||| |||  |     || ||    |||||||             |  || |  ||||  |  | |  || ||| | |  |||    |  ||     
GCGAAATTGCGAGCCCAGAATTCACCCAGTCTGGATTCTGATTCAGCGGCAGAAAAGAATGGTTTCACCCGACGCCACTCTCTTCCTTCCAGTACAAAGAgtaagtttgaactcactgtgtttacagacgcgtacaaggaagtgagaggggtgatgttaaaaaagtaaagggtctgataagtattaaaaaaa-ggtgtttc----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88993517|gb|CI110338.1|CI110338
EST:     AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACA                         ACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCA
genomic: AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACAgtaagttgaa ... catctatcagACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCA
EST: gi|86881817|gb|CI324104.1|CI324104
EST:     AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACA                         ACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCA
genomic: AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACAgtaagttgaa ... catctatcagACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCA
EST: gi|86864482|gb|CI334759.1|CI334759
EST:     AGACATGAATGGCTTCACACCCCGCCAGTCTCTACCTTCTTCTACAAACA                         ACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCA
genomic: AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACAgtaagttgaa ... catctatcagACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCA
EST: gi|86884489|gb|CI337057.1|CI337057
EST:     AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACA                         ACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCA
genomic: AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACAgtaagttgaa ... catctatcagACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCA
EST: gi|86868088|gb|CI331855.1|CI331855
EST:     AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACA                         ACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCA
genomic: AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACAgtaagttgaa ... catctatcagACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCA
EST: gi|89168353|gb|CI109557.1|CI109557
EST:     AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACA                         ACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCA
genomic: AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACAgtaagttgaa ... catctatcagACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCA
EST: gi|88987370|gb|CI034334.1|CI034334
EST:     AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACA                         ACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCA
genomic: AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACAgtaagttgaa ... catctatcagACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCA
EST: gi|86592238|gb|CI272584.1|CI272584
EST:     AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACA                         ACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCA
genomic: AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACAgtaagttgaa ... catctatcagACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCA
EST: gi|86833517|gb|CI336306.1|CI336306
EST:     AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACA                         ACAGAGCGATCAGAGCTGAATGGAGACGGTGTTGAGGACAACCAACTTCCA
genomic: AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACAgtaagttgaa ... catctatcagACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCA
EST: gi|86887777|gb|CI319727.1|CI319727
EST:     AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACA                         ACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCA
genomic: AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACAgtaagttgaa ... catctatcagACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCA
EST: gi|88983121|gb|CI020685.1|CI020685
EST:     AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACA                         ACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCA
genomic: AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACAgtaagttgaa ... catctatcagACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCA
EST: gi|86868827|gb|CI334199.1|CI334199
EST:     AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACA                         ACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCA
genomic: AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACAgtaagttgaa ... catctatcagACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCA
EST: gi|38477194|gb|CF961327.1|CF961327
EST:     AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACA                         ACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCA
genomic: AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACAgtaagttgaa ... catctatcagACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCA
EST: gi|86833337|gb|CI334932.1|CI334932
EST:     AGACATGAATGGCTTCACACCCCGCCAGTCTCTACCTTCTTCTACAAACA                         ACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCA
genomic: AGACATGAATGGCTTCACACGCCGCCAGTCTCTACCTTCTTCTACAAACAgtaagttgaa ... catctatcagACAGAGCGATCAGAGCTGAATGGAGACGGTGGTGAGGACAACCAACTTCCA