1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCGGATTCCCTATATGACCTATCACAGTTAATAATGCAAGAATTTAGAAGACTTGCATTTGAAGTGTCGGAAACAGAGGTTGCTCGTGCTCGTAATCAGgttgcttatccatctcaagttgctaattcagagtttttacccattgagtcatttctactgtgaatttgtggtgttagacaacatttttctagaaggcaaa...
species | Oryza sativa |
transcript | LOC_Os01g51390.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCTTGCATTTTGAAGTGTCGGAAACAGAGGTTGCTCGTGCNCGTAATCAG TTGAAATCTGCTCTTTTACTTCACATTGACGGATCCACTGCTGTTTCTGAAEST: gi|396941466|gb|HO188675.1|HO188675
genomic: -CTTGCA-TTTGAAGTGTCGGAAACAGAGGTTGCTCGTGCTCGTAATCAGgttgcttatc ... ttaatttcagTTGAAATCTGCTCTTTTACTTCACATTGACGGATCCACTGCTGTTTCTGAA
EST: GACTTGCATTTGAAGTGTCGGAAACAGAGGTTGCTCGTGCTCGTAATCAG TTGAAATCTGCTCTTTTACTTCACATTGACGGATCCACTGCTGTTTCTEST: gi|33687242|gb|CF315481.1|CF315481
genomic: GACTTGCATTTGAAGTGTCGGAAACAGAGGTTGCTCGTGCTCGTAATCAGgttgcttatc ... ttaatttcagTTGAAATCTGCTCTTTTACTTCACATTGACGGATCCACTGCTGTTTCT
EST: GACTTGCATTTGAAGTGTCGGAAACAGAGGTTGCTCGTGCTCGTAATCAG TTGAAATCTGCTCTTTTACTTCACATTGACGGATCCACTGCTGTTTCTGAAEST: gi|117220685|gb|CT852401.1|CT852401
genomic: GACTTGCATTTGAAGTGTCGGAAACAGAGGTTGCTCGTGCTCGTAATCAGgttgcttatc ... ttaatttcagTTGAAATCTGCTCTTTTACTTCACATTGACGGATCCACTGCTGTTTCTGAA
EST: GACTTGCATTTGAAGTGTCGGAAACAGAGGTTGCTCGTGCTCGTAATCAG TTGAAATCTGCTCTTTTACTTCACATTGACGGATCCACTGCTGTTTCTGAAEST: gi|86870480|gb|CI320576.1|CI320576
genomic: GACTTGCATTTGAAGTGTCGGAAACAGAGGTTGCTCGTGCTCGTAATCAGgttgcttatc ... ttaatttcagTTGAAATCTGCTCTTTTACTTCACATTGACGGATCCACTGCTGTTTCTGAA
EST: TCGTGCTCGTAATCAGG TTGAAATCTGCTCTTTTACTTCACATTGACGGATCCACTCCTGTTTCTGAEST: gi|86533720|gb|CI173926.1|CI173926
genomic: TCGTGCTCGTAATCA-Ggttgcttatc ... ttaatttcagTTGAAATCTGCTCTTTTACTTCACATTGACGGATCCACTGCTGTTTCTGA
EST: GACTTGCATTTGAAGTGTCGGAAACAGAGGTTGCTCGTGCTCGTAATCAG TTGAAATCTGCTCTTTTACTTCACATTGACGGATCCACTGCTGTTTCTGAA
genomic: GACTTGCATTTGAAGTGTCGGAAACAGAGGTTGCTCGTGCTCGTAATCAGgttgcttatc ... ttaatttcagTTGAAATCTGCTCTTTTACTTCACATTGACGGATCCACTGCTGTTTCTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGGATTCCCTATATGACCTATCACAGTTAATAATGCAAGAATTTAGAAGACTTGCATTTGAAGTGTCGGAAACAGAGGTTGCTCGTGCTCGTAATCAGgttgcttatccatctcaagttgctaattcagagtttttacccattgagtcatttctactgtgaatttgtggtgttagacaacatttttctagaaggcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG