1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCTATTTGATAAGGGTGCGGCAGAAGGATTTATTAAGGCCGATTGCAGACAAATAATTGTTTCGGCACCGACTGCGCATGAGCTGCTGAGAAAGATGGAGgtaaactgacctcatttatctgtggttaataccttgtcttttagtttaaaaatacctaacttgatcgacttaacattgtttattgtattgacgatattttgtcttcgtcatgttcag
species | Oryza sativa |
transcript | LOC_Os01g51210.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AAATAATTGTTTCGGCACCGACTGCGCATGAGCTGCTGAGAAAGATGGAG CAATACACTCGTTCACACCAGGAGGTAGCGCCACGTACAAGCTGGGAGATGEST: gi|88445999|gb|CI549722.1|CI549722
genomic: AAATAATTGTTTCGGCACCGACTGCGCATGAGCTGCTGAGAAAGATGGAGgtaaactgac ... tcatgttcagCAATACACTCGTTCACACCAGGAGGTAGCGCCACGTACAAGCTGGGAGATG
EST: AAATAATTGTTTCGGCACCGACTGCGCATGAGCTGCTGAGAAAGATGGAG CAATACACTCGTTCACACCAGGAGGTAGCGCCACGTACAAGCTGGGAGATGEST: gi|88849870|gb|CI001576.1|CI001576
genomic: AAATAATTGTTTCGGCACCGACTGCGCATGAGCTGCTGAGAAAGATGGAGgtaaactgac ... tcatgttcagCAATACACTCGTTCACACCAGGAGGTAGCGCCACGTACAAGCTGGGAGATG
EST: AAATAATTGTTTCGGCACCGACTGCGCATGAGCTGCTGAGAAAGATGGAG CAATACACTCGTTCACACCAGGAGGTAGCGCCACGTACAAGCTGGGAGATGEST: gi|89197115|gb|CI021955.1|CI021955
genomic: AAATAATTGTTTCGGCACCGACTGCGCATGAGCTGCTGAGAAAGATGGAGgtaaactgac ... tcatgttcagCAATACACTCGTTCACACCAGGAGGTAGCGCCACGTACAAGCTGGGAGATG
EST: AAATAATTGTTTCGGCACCGACTGCGCATGAGCTGCTGAGAAAGATGGAG CAATACACTCGTTCACACCAGGAGGTAGCGCCACGTACAAGCTGGGAGATGEST: gi|88985113|gb|CI011964.1|CI011964
genomic: AAATAATTGTTTCGGCACCGACTGCGCATGAGCTGCTGAGAAAGATGGAGgtaaactgac ... tcatgttcagCAATACACTCGTTCACACCAGGAGGTAGCGCCACGTACAAGCTGGGAGATG
EST: AAATAATTGTTTCGGCACCGACTGCGCATGAGCTGCTGAGAAAGATGGAG CAATACACTCGTTCACACCAGGAGGTAGCGCCACGTACAAGCTGGGAGATGEST: gi|88981779|gb|CI027357.1|CI027357
genomic: AAATAATTGTTTCGGCACCGACTGCGCATGAGCTGCTGAGAAAGATGGAGgtaaactgac ... tcatgttcagCAATACACTCGTTCACACCAGGAGGTAGCGCCACGTACAAGCTGGGAGATG
EST: AAATAATTGTTTCGGCACCGACTGCGCATGAGCTGCTGAGAAAGATGGAG CAATACACTCGTTCACACCAGGAGGTAGCGCCACGTACAAGCTGGGAGATGEST: gi|9865848|gb|AU101598.1|AU101598
genomic: AAATAATTGTTTCGGCACCGACTGCGCATGAGCTGCTGAGAAAGATGGAGgtaaactgac ... tcatgttcagCAATACACTCGTTCACACCAGGAGGTAGCGCCACGTACAAGCTGGGAGATG
EST: AAATAATTGTTTCGGCACCGACTGCGCATGAGCTGCTGAGAAAGATGGAG CAATACACTCGTTCACACCAGGAGGTAGCGCCACGTACAAGCTGGGAGATGEST: gi|86598696|gb|CI355313.1|CI355313
genomic: AAATAATTGTTTCGGCACCGACTGCGCATGAGCTGCTGAGAAAGATGGAGgtaaactgac ... tcatgttcagCAATACACTCGTTCACACCAGGAGGTAGCGCCACGTACAAGCTGGGAGATG
EST: AAATAATTGTTTCGGCACCGACTGCGCATGAGCTGCTGAGAAAGATGGAG CAATACACTCGTTCACACCAGGAGGTAGCGCCACGTACAAGCTGGGAGATGEST: gi|13895973|gb|AU182309.1|AU182309
genomic: AAATAATTGTTTCGGCACCGACTGCGCATGAGCTGCTGAGAAAGATGGAGgtaaactgac ... tcatgttcagCAATACACTCGTTCACACCAGGAGGTAGCGCCACGTACAAGCTGGGAGATG
EST: AAATAATTGTTTCGGCACCGACTGCGCATGAGCTGCTGAGAAAGATGGAG CAATACACTCGTTCACACCAGGAGGTAGCGCCACGTACAAGCTGGGAGATGEST: gi|86543341|gb|CI183547.1|CI183547
genomic: AAATAATTGTTTCGGCACCGACTGCGCATGAGCTGCTGAGAAAGATGGAGgtaaactgac ... tcatgttcagCAATACACTCGTTCACACCAGGAGGTAGCGCCACGTACAAGCTGGGAGATG
EST: AAATAATTGTTTCGGCACCGACTGCGCATGAGCTGCTGAGAAAGATGGAG CAATACACTCGTTCACACCAGGAGGTAGCGCCACGTACAAGCTGGGAGATG
genomic: AAATAATTGTTTCGGCACCGACTGCGCATGAGCTGCTGAGAAAGATGGAGgtaaactgac ... tcatgttcagCAATACACTCGTTCACACCAGGAGGTAGCGCCACGTACAAGCTGGGAGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTATTTGATAAGGGTGCGGCAGAAGGATTTATTAAGGCCGATTGCAGACAAATAATTGTTTCGGCACCGACTGCGCATGAGCTGCTGAGAAAGATGGAGgtaaactgacctcatttatctgtggttaataccttgtcttttagtttaaaaatacctaacttgatcgacttaacattgtttattgtattgacgatattttgtcttcgtcatgttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA