Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTACATGAGGGCTGATGATACACCAGATAACTACTGGTTTCGCGTATTGGTGCGTGAATGGGTACAGTTTTGCATATTCATGTATATTGGgtgagtcaaaatcatttcttaatatagattgaagaaagtaatgcaaaacagccaaatgagatcaaagcggatgtgacgcagttcttgttcccatttttag

Basic information

species Oryza sativa
transcript LOC_Os01g48570.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g48570.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM5G866432_T01 (Zea mays), 5'ss of exon 6
GTGTACATGAGGGCTGATGATACACCAGATAACTACTGGTTTCGCGTATTGGTGCGTGAATGGGTACAGTTTTGCATATTCATGTATATTGGgtgagtcaaaatcatttcttaatatagattgaagaaagtaatgcaaaacagccaaatgagatcaaagc--ggatgtgacgcagttcttgttcccatttttag-----
|| |||||||||||||| || || |||||||||||||||||||||||  | ||||| || ||||||||||| ||||| |||||||| |||||||||||| | |||||    |   |     | |  | |  ||     | | |||   || | ||||| |  ||||||||        ||| |||| | | |       
GTATACATGAGGGCTGACGACACGCCAGATAACTACTGGTTTCGCGTGCTAGTGCGCGAGTGGGTACAGTTCTGCATCTTCATGTACATTGGgtgagtcgagatcatacgctggca----gtaagcagaacaacc---atctgcctg-tgtgttcaaaaccgggatgtgagctcagctttgctcccttctcttttccag