1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGCCAGGCTGTCAGTGAGGAGGAGATACATGCTATTTTATCGGAGCAATCACTTTACCCTGCAGGGTGGATACATgtaacactcgcaaccattatttacccttttgtcttgatatccttggaactttcatattatcaaatccaacttaaaatggaacccatgcatgaccttcttgatatgttcatatataatggttattttagttagcagctcacagattgatttttttcattatcttttccag
species | Oryza sativa |
transcript | LOC_Os01g47262.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TACATGCTATTTTATCGGAGCAATCACTTTACCCTGCAGGGTGGATACAT ACACACCCTTCACAAACGTGTTTCTTATCATCAATTGATCTGCACACTCAAEST: gi|218493474|gb|FG952533.1|FG952533
genomic: TACATGCTATTTTATCGGAGCAATCACTTTACCCTGCAGGGTGGATACATgtaacactcg ... tcttttccagACACACCCTTCACAAACGTGTTTCTTATCATCAATTGATCTGCACACTCAA
EST: TACATGCTATTTTATCGGAGCAATCACTTTACCCTGCAGGGTGGATACAT ACACACCCTTCACAAACGTGTTTCTTATCATCAATTGATCTGCACACTCAAEST: gi|33658750|gb|CF281363.1|CF281363
genomic: TACATGCTATTTTATCGGAGCAATCACTTTACCCTGCAGGGTGGATACATgtaacactcg ... tcttttccagACACACCCTTCACAAACGTGTTTCTTATCATCAATTGATCTGCACACTCAA
EST: TACATGCTATTTTATCGGAGCAATCACTTTACCCTGCAGGGTGGATACAT ACACACCCTTCACAAACGTGTTTCTTATCATCAATTGATCTGCACACTCAAEST: gi|29670555|gb|CB666830.1|CB666830
genomic: TACATGCTATTTTATCGGAGCAATCACTTTACCCTGCAGGGTGGATACATgtaacactcg ... tcttttccagACACACCCTTCACAAACGTGTTTCTTATCATCAATTGATCTGCACACTCAA
EST: TACATGCTATTTTATCGGAGCAATCACTTTACCCTGCAGGGTGGATACAT ACACACCCTTCACAAACGTGTTTCTTATCATCAATTGATCTGCACACTCAAEST: gi|88226876|gb|CI224644.1|CI224644
genomic: TACATGCTATTTTATCGGAGCAATCACTTTACCCTGCAGGGTGGATACATgtaacactcg ... tcttttccagACACACCCTTCACAAACGTGTTTCTTATCATCAATTGATCTGCACACTCAA
EST: TACATGCTATTTTATCGGAGCAATCACTTTACCCTGCAGGGTGGATACAT ACACACCCTTCACAAACGTGTTTCTTATCATCAATTGATCTGCACACTCAAEST: gi|86496637|gb|CI139270.1|CI139270
genomic: TACATGCTATTTTATCGGAGCAATCACTTTACCCTGCAGGGTGGATACATgtaacactcg ... tcttttccagACACACCCTTCACAAACGTGTTTCTTATCATCAATTGATCTGCACACTCAA
EST: TACATGCTATTTTATCGGAGCAATCACTTTACCCTGCAGGGTGGATACAT ACACACCCTTCACAAACGTGTTTCTTATCATCAATTGATCTGCACACTTAA
genomic: TACATGCTATTTTATCGGAGCAATCACTTTACCCTGCAGGGTGGATACATgtaacactcg ... tcttttccagACACACCCTTCACAAACGTGTTTCTTATCATCAATTGATCTGCACACTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCCAGGCTGTCAGTGAGGAGGAGATACATGCTATTTTATCGGAGCAATCACTTTACCCTGCAGGGTGGATACATgtaacactcgcaaccattatttacccttttgtcttgatatccttggaactttcatattatcaaatccaacttaaaatggaacccatgcatgaccttcttgatatgttcatatataatggttattttagttagcagctcacagattgatttttttcattatcttttccag
- - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA