1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CCTATTTTCGCAGAAGTTTCCTAGTGCAGATCCTTTGGCGTTGGATCTTCTACAAAAACTATTAGCATTCGATCCAAAGGACCGTCCAACTGCCGAAGAGgtaactatttaaacagcatggtgcatggtgcagctttgtttaatctcagcagcactaaatattgtattttcaaactgtgaaaattatttagttattcgttattcatgtcag
species | Oryza sativa |
transcript | LOC_Os01g43910.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TACAAAAACTATTAGCATTCGATCCAAAGGACCGTCCAACTGCCGAAGAG GCATTGGCTCATCCATACTTCAAAGGGCTTGCAAAAGTTGAGAGAGAACCAEST: gi|88402797|gb|CI613245.1|CI613245
genomic: TACAAAAACTATTAGCATTCGATCCAAAGGACCGTCCAACTGCCGAAGAGgtaactattt ... ttcatgtcagGCATTGGCTCATCCATACTTCAAAGGGCTCGCAAAAGTTGAGAGAGAACCA
EST: TACAAAAACTATTAGCATTCGATCCAAAGGACCGTCCAACTGCCGAAGAG GCATTGGCTCATCCATACTTCAAAGGGCTCGCAAAAGTTGAGAGAGAACCAEST: gi|88402739|gb|CI613187.1|CI613187
genomic: TACAAAAACTATTAGCATTCGATCCAAAGGACCGTCCAACTGCCGAAGAGgtaactattt ... ttcatgtcagGCATTGGCTCATCCATACTTCAAAGGGCTCGCAAAAGTTGAGAGAGAACCA
EST: TACAAAAACTATTAGCATTCGATCCAAAGGACCGTCCAACTGCCGAAGAG GCATTGGCTCATCCATACTTCAAAGGGCTCGCAAAAGTTGAGAGAGAACCAEST: gi|58658976|gb|CK047656.1|CK047656
genomic: TACAAAAACTATTAGCATTCGATCCAAAGGACCGTCCAACTGCCGAAGAGgtaactattt ... ttcatgtcagGCATTGGCTCATCCATACTTCAAAGGGCTCGCAAAAGTTGAGAGAGAACCA
EST: TACAAAAACTATTAGCATTCGATCCAAAGGACCGTCCAACTGCCGAAGAG GCATTGGCTCATCCATACTTCAAAGGGCTTGCAAAAGTTGAGAGAGAACCAEST: gi|58683868|gb|CK072555.1|CK072555
genomic: TACAAAAACTATTAGCATTCGATCCAAAGGACCGTCCAACTGCCGAAGAGgtaactattt ... ttcatgtcagGCATTGGCTCATCCATACTTCAAAGGGCTCGCAAAAGTTGAGAGAGAACCA
EST: TACAAAAACTATTAGCATTCGATCCAAAGGACCGTCCAACTGCCGAAGAG GCATTGGCTCATCCATACTTCAAAGGGCTTGCAAAAGTTGAGAGAGAACCA
genomic: TACAAAAACTATTAGCATTCGATCCAAAGGACCGTCCAACTGCCGAAGAGgtaactattt ... ttcatgtcagGCATTGGCTCATCCATACTTCAAAGGGCTCGCAAAAGTTGAGAGAGAACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTATTTTCGCAGAAGTTTCCTAGTGCAGATCCTTTGGCGTTGGATCTTCTACAAAAACTATTAGCATTCGATCCAAAGGACCGTCCAACTGCCGAAGAGgtaactatttaaacagcatggtgcatggtgcagctttgtttaatctcagcagcactaaatattgtattttcaaactgtgaaaattatttagttattcgttattcatgtcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA