1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCAGACCGTGAAAACATGCCCAGCAGCAATGGGCTTTGCTTTTGCTGCTGGAACCACAGATGGCCCTGGAGCTTTTGATTTCAGACAAGGAGATGTCAAGgtttagcatgtcaatacatagtagcttcaaaatttgggtaacatgctactcactggtttatatatctcttaccag
species | Oryza sativa |
transcript | LOC_Os01g43520.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GAACCACAGATGGCCCTGGAGCTTTTGATTTCAGACAAGGAGATGTCAAG GGAAACCCTTTCTGGAAGTTAGTAAGGAACTTGTTAAAGACACCAGGGAAGEST: gi|88410166|gb|CI573405.1|CI573405
genomic: GAACCACAGATGGCCCTGGAGCTTTTGATTTCAGACAAGGAGATGTCAAGgtttagcatg ... ctcttaccagGGAAACCCTTTCTGGAAGTTAGTAAGGAACTTGTTAAAGACACCAGGGAAG
EST: GAACCACAGATGGCCCTGGAGCTTTTGATTTCAGACAAGGAGATGTCAAG GGAAACCCTTTCTGGAAGTTAGTAAGGAACTTGTTAAAGACACCAGGGAAGEST: gi|88852119|gb|CI683637.1|CI683637
genomic: GAACCACAGATGGCCCTGGAGCTTTTGATTTCAGACAAGGAGATGTCAAGgtttagcatg ... ctcttaccagGGAAACCCTTTCTGGAAGTTAGTAAGGAACTTGTTAAAGACACCAGGGAAG
EST: GAACCACAGATGGCCCTGGAGCTTTTGATTTCAGACAAGGAGATGTCAAG GGAAACCCTTTCTGGAAGTTAGTAAGGAACTTGTTAAAGACACCAGGGAAAEST: gi|58652780|gb|CK041460.1|CK041460
genomic: GAACCACAGATGGCCCTGGAGCTTTTGATTTCAGACAAGGAGATGTCAAGgtttagcatg ... ctcttaccagGGAAACCCTTTCTGGAAGTTAGTAAGGAACTTGTTAAAGACACCAGGGAA-
EST: GAACCACAGATGGCCCTGGAGCTTTTGATTTCAGACAAGGAGATGTCAAG GGAAACCCTTTCTGGAAGTTAGTAAGGAACTTGTTAAAGACACCAGGGAAG
genomic: GAACCACAGATGGCCCTGGAGCTTTTGATTTCAGACAAGGAGATGTCAAGgtttagcatg ... ctcttaccagGGAAACCCTTTCTGGAAGTTAGTAAGGAACTTGTTAAAGACACCAGGGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGACCGTGAAAACATGCCCAGCAGCAATGGGCTTTGCTTTTGCTGCTGGAACCACAGATGGCCCTGGAGCTTTTGATTTCAGACAAGGAGATGTCAAGgtttagcatgtcaatacatagtagcttcaaaatttgggtaacatgctactcactggtttatatatctcttaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG