1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGGTGGCAGGGTTGCAGAGGAGCTCATTTTTGGGGAAGACAATGTTACAACTGGGGCAAGAAATGATCTTCATACTGCAACAGAGCTTGCTCAGTACATGgtaattattttattacccatgaaattttcctgttaggtgtttaaatagcttaactgagttgctgcgtag
species | Oryza sativa |
transcript | LOC_Os01g43150.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CTGGGGCAAGAAATGATCTTCATACTGCAACAGAGCTTGCTCAGTACATG GTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTGCATGTGAAAGAAEST: gi|29672103|gb|CB668378.1|CB668378
genomic: CTGGGGCAAGAAATGATCTTCATACTGCAACAGAGCTTGCTCAGTACATGgtaattattt ... tgctgcgtagGTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTGCATGTGAAAGAA
EST: CTGGGGCAAGAAATGATCTTCATACTGCAACAGAGCTTGCTCAGTACATG GTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTGCATGTGAAAGAAEST: gi|8956558|gb|BE230473.1|BE230473
genomic: CTGGGGCAAGAAATGATCTTCATACTGCAACAGAGCTTGCTCAGTACATGgtaattattt ... tgctgcgtagGTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTGCATGTGAAAGAA
EST: CTGGGGCAAGAAATGATCTTCATACTGCAACAGAGCTTGCTCAGTACATG GTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTGCATGTGAAAGAAEST: gi|33684137|gb|CF312376.1|CF312376
genomic: CTGGGGCAAGAAATGATCTTCATACTGCAACAGAGCTTGCTCAGTACATGgtaattattt ... tgctgcgtagGTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTGCATGTGAAAGAA
EST: ATACTGCAACAGAGCTTGCTCAGTACATG GTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTGCATGTGAAAGAAEST: gi|29623624|gb|CB628635.1|CB628635
genomic: ATACTGCAACAGAGCTTGCTCAGTACATGgtaattattt ... tgctgcgtagGTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTGCATGTGAAAGAA
EST: CTGGGGCAAGAAATGATCTTCATACTGCAACAGAGCTTGCTCAGTACATG GTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTGCATGTGAAAGAA
genomic: CTGGGGCAAGAAATGATCTTCATACTGCAACAGAGCTTGCTCAGTACATGgtaattattt ... tgctgcgtagGTATCAAATTGTGGGATGAGTGATGCTATTGGTCCTGTGCATGTGAAAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGTGGCAGGGTTGCAGAGGAGCTCATTTTTGGGGAAGACAATGTTACAACTGGGGCAAGAAATGATCTTCATACTGCAACAGAGCTTGCTCAGTACATGgtaattattttattacccatgaaattttcctgttaggtgtttaaatagcttaactgagttgctgcgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT