1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGCCCTCAAGTGCGTCGACCCCAAAGCGGACAAGCGGCCCACGATGGGCAGCGTCGTCCGCATGCTGGAGGCCGATGATGTTGCGCTATCATCACGGCAGgtttgtttttagcatcttctttattttgtttttttctccctaaatcaattattagtacaaccattttgtcgccgtcggtgtcgatgctgaacgcctgaaccacctgaagtttttgtatgcgctcttgctcaag
species | Oryza sativa |
transcript | LOC_Os01g41730.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GCGTCGTCCGCATGCTGGAGGCCGATGATGTTGCGCTATCATCACGGCAG GATCGGAGGAGCCCGATGGGGCGATGCGGCGACGGCGACGGTTCAGGGCGGEST: gi|89180073|gb|CI044352.1|CI044352
genomic: GCGTCGTCCGCATGCTGGAGGCCGATGATGTTGCGCTATCATCACGGCAGgtttgttttt ... cttgctcaagGATCGGAGGAGCCCGATGGGGCGATGCGGCGACGGCGACGGTTCAGGGCGG
EST: GCGTCGTCCGCATGCTGGAGGCCGATGATGTTGCGCTATCATCACGGCAG GATCGGAGGAGCCCGATGGGGCGATGCGGCGACGGCGACGGTTCAGGGCGGEST: gi|86528880|gb|CI169086.1|CI169086
genomic: GCGTCGTCCGCATGCTGGAGGCCGATGATGTTGCGCTATCATCACGGCAGgtttgttttt ... cttgctcaagGATCGGAGGAGCCCGATGGGGCGATGCGGCGACGGCGACGGTTCAGGGCGG
EST: GCGTCGTCCGCATGCTGGAGGCCGATGATGTTGCGCTATCATCACGGCAG GATCGGAGGAGCCCGATGGGGCGATGCGGCGACGGCGACGGTTCAGGGCGG
genomic: GCGTCGTCCGCATGCTGGAGGCCGATGATGTTGCGCTATCATCACGGCAGgtttgttttt ... cttgctcaagGATCGGAGGAGCCCGATGGGGCGATGCGGCGACGGCGACGGTTCAGGGCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCCCTCAAGTGCGTCGACCCCAAAGCGGACAAGCGGCCCACGATGGGCAGCGTCGTCCGCATGCTGGAGGCCGATGATGTTGCGCTATCATCACGGCAGgtttgtttttagcatcttctttattttgtttttttctccctaaatcaattattagtacaaccattttgtcgccgtcggtgtcgatgctgaacgcctgaaccacctgaagtttttgtatgcgctcttgctcaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG