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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACAATGAGAAAGGACGACTTTCGAGGTTGAAGCTCTCTGTCATTCTGCTCATCCTAACAAATGTTCCAATGGCTTTATATATGTCCTTATACCATCAAgtaagtactactttaagtaaacatgttctttatgtgtgtgttttgggttaatttggttgctttctatttgtgcctagttaacttttcttttcaagattcctttacttctgttatgtgtatgtgtaccttttcattatgtcag

Basic information

species Oryza sativa
transcript LOC_Os01g39810.3
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g39810.4 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G000937_T02 (Zea mays), 5'ss of exon 8
TCACAATGAGAAAGGACGACTTTCGAGGTTGAAGCTCTCTGTCATTCTGCTCATCCTAACAAATGTTCCAATGGCTTTATATATGTCCTTATACCATCAAgtaagtactactttaagtaaacatgttctttatg---tgtgtgttt-tgggttaatttggttgctttctatttgtgcctagttaacttttcttttcaagattcctttacttctgttatgtgtatgtgtaccttttcattatgtcag
|||  ||  ||||||| | ||||| ||| || |||| ||||| ||||| ||| || |||| |||||||| |||||||||||||||||||||| |||||||||| ||  | |  ||  | ||  | ||  |  ||   | ||  | | ||| | | ||| |||||||     || |  | | |||  |    | ||||| |||| ||     | |                                
TCAGCATAGGAAAGGAAGTCTTTCAAGGCTGCAGCTTTCTGTTATTCTTCTCGTCATAACCAATGTTCCCATGGCTTTATATATGTCCTTATTCCATCAAgtaggtttt-ccctatttcaatgtttttgtattgctctatgcatctatggatcacttttgttgcttatccattatttccattta--tcccatattcaacattcatt-gtggcag--------------------------------

upper sequence: LOC_Os01g39810.4 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G103473_T01 (Zea mays), 5'ss of exon 1
TCACAATGAGAAAGGACGACTTTCGAGGTTGAAGCTCTCTGTCATTCTGCTCATCCTAACAAATGTTCCAATGGCTTTATATATGTCCTTATACCATCAAgtaagtactactttaagtaaacatgttctttatg---tgtgtgttt-tgggttaatttggttgctttctatttgtgcctagttaacttttcttttcaagattcctttacttctgttatgtgtatgtgtaccttttcattatgtcag
|||  ||  ||||||| | ||||| ||| || |||| ||||| ||||| ||| || |||| |||||||| |||||||||||||||||||||| |||||||||| ||  | |  ||  | || || ||  |  ||   | ||  | | ||| | | ||| |||||||     || |  | | |||  |    | ||||| |||| ||     | |                                
TCAGCATAGGAAAGGAAGTCTTTCAAGGCTGCAGCTTTCTGTTATTCTTCTCGTCATAACCAATGTTCCCATGGCTTTATATATGTCCTTATTCCATCAAgtaggtttt-ccctatttcaatatttttgtattgctctatgcatctatggatcacttttgttgcttatccattatttccattta--tcccatattcaacattcatt-gtggcag--------------------------------

upper sequence: LOC_Os01g39810.4 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G164175_T02 (Zea mays), 5'ss of exon 8
TCACAATGAGAAAGGACGACTTTCGAGGTTGAAGCTCTCTGTCATTCTGCTCATCCTAACAAATGTTCCAATGGCTTTATATATGTCCTTATACCATCAAgtaagtactactttaagtaaacatgttctttatg---tgtgtgttt-tgggttaatttggttgctttctatttgtgcctagttaacttttcttttcaagattcctttacttctgttatgtgtatgtgtaccttttcattatgtcag
|||  ||  |||||   | ||||| ||| || | |  | ||| ||||| ||| || |||| || ||||| |||||||||||||||||||||| |||||||||| ||  | |  ||  | |  || ||  |  ||   | ||  | | ||| | | ||| |||||||     || |  | | |||  |    | ||||| |||| ||     | |                                
TCAGCATAGGAAAGATAGTCTTTCAAGGATGCAACCTTTTGTTATTCTTCTCGTCATAACCAACGTTCCCATGGCTTTATATATGTCCTTATTCCATCAAgtaggtttt-ccctatttcattatttttgtattgctctatgcatctatggatcacttttgttgcttatccattatttccatttatatcccatattcaacattcatt-gtggcag--------------------------------