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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGGCGATGGAGAGGAAAAGTATCTCATCGCTACATCCGAGCAACCGCTGTGTGCGTATCATCTAGGTGATCGAATTTATCCTGCTGAATTGCCAATTAGgtgggtaatgtctaaatttaggtagtttggtttggttgatgtgcgctagcagtttgatgatagttttgccaatttag

Basic information

species Oryza sativa
transcript LOC_Os01g37837.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163920929|gb|EG710103.1|EG710103
EST:     TGTGCGTATCATCTAGGTGATCGAATTTATCCTGCTGAATTGCCAATTAG                         ATATGCTGGATATTCCACCTGCTTCCGGAAAGAAGCTGGTTCACATGGAAG
genomic: TGTGCGTATCATCTAGGTGATCGAATTTATCCTGCTGAATTGCCAATTAGgtgggtaatg ... gccaatttagATATGCTGGATATTCCACCTGCTTCCGGAAAGAAGCTGGTTCACATGGAAG
EST: gi|33796179|gb|CF323955.1|CF323955
EST:     TGTGCGTATCATCTAGGTGATCGAATTTATCCTGCTGAATTGCCAATTAG                         ATATGCTGGATATTCCACCTGCTTCCGGAAAGAAGCTGGTTCACATGGAAG
genomic: TGTGCGTATCATCTAGGTGATCGAATTTATCCTGCTGAATTGCCAATTAGgtgggtaatg ... gccaatttagATATGCTGGATATTCCACCTGCTTCCGGAAAGAAGCTGGTTCACATGGAAG
EST: gi|27577321|gb|CB000016.1|CB000016
EST:     TGTGCGTATCATCTAGGTGANNNNNNNNNNCCTGCTGAATTGCCAATTAG                         ATATGCTGGATATTCCACCTGCTTCCGGAAAGAAGCTGGTTCACATGGAAG
genomic: TGTGCGTATCATCTAGGTGATCGAATTTATCCTGCTGAATTGCCAATTAGgtgggtaatg ... gccaatttagATATGCTGGATATTCCACCTGCTTCCGGAAAGAAGCTGGTTCACATGGAAG