1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AAGAAAGGTCAAATATGTCTATGCGAATGACCTAAACCCCACTGCAGTGGAGTACCTTGAGAGAAACATTGTTCTTAACAAGCTCGAGAGAAAAATCGAGgtagttccaactatgagataagcgagatagcactcatgtctttctatttattaataaatttcctgtgatggctttcagattttattgtagcttacataaa...
species | Oryza sativa |
transcript | LOC_Os01g29409.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGTACCTTGAGAGAAACATTGTTCTTAACAAGCTCGAGAGAAAAATCGAG GTTTTTAACATGGACGCTAGAAGGTTTATCAGTTCAATATACTCAAGCCAAEST: gi|88199516|gb|CI199366.1|CI199366
genomic: AGTACCTTGAGAGAAACATTGTTCTTAACAAGCTCGAGAGAAAAATCGAGgtagttccaa ... gtcgaaccagGTTTTTAACATGGACGCTAGAAGGTTTATCAGTTCAATATACTCAAGCCAA
EST: CATTGTTCTTAACAAGCTCGAGAGAAAAATCGAG GTTTTTAACATGGACGCTAGAAGGTTTATCAGTTCAATATACTCAAGCCAAEST: gi|29617638|gb|CB622650.1|CB622650
genomic: CATTGTTCTTAACAAGCTCGAGAGAAAAATCGAGgtagttccaa ... gtcgaaccagGTTTTTAACATGGACGCTAGAAGGTTTATCAGTTCAATATACTCAAGCCAA
EST: AGTACCTTGAGAGAAACATTGTTCTTAACAAGCTCGAGAGAAAAATCGAG GTTTTTAACATGGACGCTAGAAGGTTTATCAGTTCAATATACTCAAGCCAAEST: gi|29618956|gb|CB623968.1|CB623968
genomic: AGTACCTTGAGAGAAACATTGTTCTTAACAAGCTCGAGAGAAAAATCGAGgtagttccaa ... gtcgaaccagGTTTTTAACATGGACGCTAGAAGGTTTATCAGTTCAATATACTCAAGCCAA
EST: AGTACCTTGAGAGAAACATTGTTCTTAACAAGCTCGAGAGAAAAATCGAG GTTTTTAACATGGACGCTAGAAGGTTTATCAGTTCAATATACTCAAGCCAAEST: gi|86882808|gb|CI327409.1|CI327409
genomic: AGTACCTTGAGAGAAACATTGTTCTTAACAAGCTCGAGAGAAAAATCGAGgtagttccaa ... gtcgaaccagGTTTTTAACATGGACGCTAGAAGGTTTATCAGTTCAATATACTCAAGCCAA
EST: ACAAGCTCGAGAGAAAAATCGAG GTTTTTAACATGGACGCTAGAAGGTTTATCAGTTCAATATACTCAAGCCAAEST: gi|86890133|gb|CI321310.1|CI321310
genomic: ACAAGCTCGAGAGAAAAATCGAGgtagttccaa ... gtcgaaccagGTTTTTAACATGGACGCTAGAAGGTTTATCAGTTCAATATACTCAAGCCAA
EST: AGTACC-TGAGAGAAACATTGTTCTTAACAAGCTCGAGAGAAAAATCGAG GTTTTTAACATGGACGCTAGAAGGTTTATCAGTTCAATATACTCAAGCCAAEST: gi|29689147|gb|CB685422.1|CB685422
genomic: AGTACCTTGAGAGAAACATTGTTCTTAACAAGCTCGAGAGAAAAATCGAGgtagttccaa ... gtcgaaccagGTTTTTAACATGGACGCTAGAAGGTTTATCAGTTCAATATACTCAAGCCAA
EST: AGTACCTTGAGAGAAACATTGTTCTTAACAAGCTCGAGAGAAAAATCGAG GTTTTTAACATGGACGCTAGAAGGTTTATCAGTTCAATATACTCAAGCCAA
genomic: AGTACCTTGAGAGAAACATTGTTCTTAACAAGCTCGAGAGAAAAATCGAGgtagttccaa ... gtcgaaccagGTTTTTAACATGGACGCTAGAAGGTTTATCAGTTCAATATACTCAAGCCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGAAAGGTCAAATATGTCTATGCGAATGACCTAAACCCCACTGCAGTGGAGTACCTTGAGAGAAACATTGTTCTTAACAAGCTCGAGAGAAAAATCGAGgtagttccaactatgagataagcgagatagcactcatgtctttctatttattaataaatttcctgtgatggctttcagattttattgtagcttacataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT