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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAGATGGCCGAGAACTTGTTGTTGGAAACAACAATGAATCAATATGTATTTACGATATTGGATCAAACAAAGTAACAGAACGCATTCACGCTCATTCGgtatgaaacagatgcatgactgagctacatgcttttattgtcaatgtatgactgttttctgtcccaccaattgatatctgcacattatcttttcttccgt...

Basic information

species Oryza sativa
transcript LOC_Os01g28680.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29612829|gb|CB617842.1|CB617842
EST:     TTTACGATATTGGATCAAACAAAGTAACAGAACGCATTCACGCTCATTCG                         GCTGATGTCAACGCAGTCACCTTTGCTGATGAAGGTAGTGATGTTTTATAC
genomic: TTTACGATATTGGATCAAACAAAGTAACAGAACGCATTCACGCTCATTCGgtatgaaaca ... gtctttaaagGCTGATGTCAATGCAGTCACCTTTGCTGATGAAGGTAGTGATGTTTTATAC
EST: gi|29688485|gb|CB684760.1|CB684760
EST:     TTTACGATATTGGATCAAACAAAGTAACAGAACGCATTCACGCTCATTCG                         GCTGATGTCAATGCAGTCACCTTTGCTGATGAAGGTAGTGATGTTTTATAC
genomic: TTTACGATATTGGATCAAACAAAGTAACAGAACGCATTCACGCTCATTCGgtatgaaaca ... gtctttaaagGCTGATGTCAATGCAGTCACCTTTGCTGATGAAGGTAGTGATGTTTTATAC
EST: gi|33693127|gb|CF321366.1|CF321366
EST:     TTTACGATATTGGATCAAACAAAGTAACAGAACGCATTCACGCTCATTCG                         GCTGATGTCAATGCAGTCACCTTTGCTGATGAAGGTAGTGATGTTTTATAC
genomic: TTTACGATATTGGATCAAACAAAGTAACAGAACGCATTCACGCTCATTCGgtatgaaaca ... gtctttaaagGCTGATGTCAATGCAGTCACCTTTGCTGATGAAGGTAGTGATGTTTTATAC