1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGCCAAAGGAGAGGGGGTAAAAAGGACTCGAACGCGGGATCGATCTCAAAGGGCAGGACCAGCTCCAGAGGCTAATGCAGAGCTTCAAGCAAACCTAGATgtaagccagctatttatatttgaagatttcctgtttaatttgctgccttatccactgtagatttgttacacatacaccaactgggttggctacgagtgat...
species | Oryza sativa |
transcript | LOC_Os01g27020.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GGGCAGGACCAGCTCCAGAGGCTAATGCAGAGCTTCAAGCAAACCTAGAT CAGAGGCGACGCATGATAACGCATGCCAATGCCAAGAGCAAAAGTGAGAAGEST: gi|88689180|gb|CI732756.1|CI732756
genomic: GGGCAGGACCAGCTCCAGAGGCTAATGCAGAGCTTCAAGCAAACCTAGATgtaagccagc ... tcattaacagCAGAGGCGACGCATGATAACGCATGCCAATGCCAAGAGCAAAAGTGAGAAG
EST: GGGCAGGACCAGCTCCAGAGGCTAATGCAGAGCTTCAAGCAAACCTAGAT CAGAGGCGACGCATGATAAEST: gi|87036963|gb|CI191585.1|CI191585
genomic: GGGCAGGACCAGCTCCAGAGGCTAATGCAGAGCTTCAAGCAAACCTAGATgtaagccagc ... tcattaacagCAGAGGCGACGCATGATAA
EST: GCTTCAAGCAAACTTAGAT CAGAGGCGACGCATGATAACGCATGCCAATGCCAAGAGCAAAAGTGAGAAGEST: gi|87028117|gb|CI257277.1|CI257277
genomic: GCTTCAAGCAAACCTAGATgtaagccagc ... tcattaacagCAGAGGCGACGCATGATAACGCATGCCAATGCCAAGAGCAAAAGTGAGAAG
EST: GGGCAGGACCAGCTCCAGAGGCTAATGCAGAGCTTCAAGCAAACCTAGAT CAGAGGCGACGCATGATAACGCATGCCAATGCCAAGAGCAAAAGTGAGAAGEST: gi|29665377|gb|CB661652.1|CB661652
genomic: GGGCAGGACCAGCTCCAGAGGCTAATGCAGAGCTTCAAGCAAACCTAGATgtaagccagc ... tcattaacagCAGAGGCGACGCATGATAACGCATGCCAATGCCAAGAGCAAAAGTGAGAAG
EST: GGGCAGGACCAGCTCCAGAGGCTAATGCAGAGCTTCAAGCAAACCTAGAT ---AGGCGACGCATGATAACGCATGCCAATGCCAAGAGCAAAAGTGAGAAGEST: gi|88993327|gb|CI257755.1|CI257755
genomic: GGGCAGGACCAGCTCCAGAGGCTAATGCAGAGCTTCAAGCAAACCTAGATgtaagccagc ... tcattaacagCAGAGGCGACGCATGATAACGCATGCCAATGCCAAGAGCAAAAGTGAGAAG
EST: GAGCTTCAAGCAAACCTAGAT CAGAGGCGACGCATGATAACGCATGCCAATGCCAAGAGCAAAAGTGAGAAGEST: gi|87008591|gb|CI315049.1|CI315049
genomic: GAGCTTCAAGCAAACCTAGATgtaagccagc ... tcattaacagCAGAGGCGACGCATGATAACGCATGCCAATGCCAAGAGCAAAAGTGAGAAG
EST: GGGCAGGACCAGCTCCAGAGGCTAATGCAGAGCTTCAAGCAAACCTAGAT CAGAGGCGACGCATGATAACGCATGCCAATGCCAAGAGCAAAAGTGAGAAGEST: gi|86492900|gb|CI135533.1|CI135533
genomic: GGGCAGGACCAGCTCCAGAGGCTAATGCAGAGCTTCAAGCAAACCTAGATgtaagccagc ... tcattaacagCAGAGGCGACGCATGATAACGCATGCCAATGCCAAGAGCAAAAGTGAGAAG
EST: CCAGAGGCTAATGCAGAGCTTCAAGCAAACCTAGAT CAGAGGCGACGCATGATAACGCATGCCAATGCCAAGAGCAAAAGTGAGAAGEST: gi|29672001|gb|CB668276.1|CB668276
genomic: CCAGAGGCTAATGCAGAGCTTCAAGCAAACCTAGATgtaagccagc ... tcattaacagCAGAGGCGACGCATGATAACGCATGCCAATGCCAAGAGCAAAAGTGAGAAG
EST: GGGCAGGACCAGCTCCAGAGGCTAATGCAGAGCTTCAAGCAAACCTAGAT CAGAGGCGACGCATGATAACGCATGCCAATGCCAAGAGCAAAAGTGAGAAGEST: gi|29625908|gb|CB630919.1|CB630919
genomic: GGGCAGGACCAGCTCCAGAGGCTAATGCAGAGCTTCAAGCAAACCTAGATgtaagccagc ... tcattaacagCAGAGGCGACGCATGATAACGCATGCCAATGCCAAGAGCAAAAGTGAGAAG
EST: GGGCAGGACCAGCTCCAGAGGCTAATGCAGAGCTTCAAGCAAACCTAGAT CAGAGGCGACGCATGATAACGCATGCCAATGCCAAGAGCAAAAGTGAGAAGEST: gi|87026938|gb|CI259591.1|CI259591
genomic: GGGCAGGACCAGCTCCAGAGGCTAATGCAGAGCTTCAAGCAAACCTAGATgtaagccagc ... tcattaacagCAGAGGCGACGCATGATAACGCATGCCAATGCCAAGAGCAAAAGTGAGAAG
EST: TTCAAGCAAACCTAGAT CAGAGGCGACGCATGATAACGCATGCCAATGCCAAGAGCAAAAGTGAGAAGEST: gi|86495956|gb|CI138589.1|CI138589
genomic: TTCAAGCAAACCTAGATgtaagccagc ... tcattaacagCAGAGGCGACGCATGATAACGCATGCCAATGCCAAGAGCAAAAGTGAGAAG
EST: CAGAGCTTCAAGCAAACCTAGAT CAGAGGCGACGCATGATAACGCATGCCAATGCCAAGAGCAAAAGTGAGAAG
genomic: CAGAGCTTCAAGCAAACCTAGATgtaagccagc ... tcattaacagCAGAGGCGACGCATGATAACGCATGCCAATGCCAAGAGCAAAAGTGAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCCAAAGGAGAGGGGGTAAAAAGGACTCGAACGCGGGATCGATCTCAAAGGGCAGGACCAGCTCCAGAGGCTAATGCAGAGCTTCAAGCAAACCTAGATgtaagccagctatttatatttgaagatttcctgtttaatttgctgccttatccactgtagatttgttacacatacaccaactgggttggctacgagtgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA