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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGATACTCTTGTGTGGAAGCTCAAGCTTCTTATGTCAGGTGTAGACTATACAAACTCTCGTCTTAATGCAGTACAAGCAGAAATTCTGCTTCTTGCCAGgtgcccttcctataaaaatatctcatatttggcaattttctactctttgttgtatttagatatttacatatttattcttgaactataaatatttgatatatatctgggtttacag

Basic information

species Oryza sativa
transcript LOC_Os01g25990.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g25990.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G031568_T01 (Zea mays), 5'ss of exon 7
TGGATACTCTTGTGTGGAAGCTCAAGCTTCTTATGTCAGGTGTAGACTATACAAACTCTCGTCTTAATGCAGTACAAGCAGAAATTCTGCTTCTTGCCAGgtgcccttcctataaaaatatct---catatttggcaattttc-tactctttgttgtatttagatatttacatatttattcttgaactataaatatttgatatatatctgggtttacag
 |||||||||| | ||||||||||| ||||| | | |||| | || |||| |||| ||||||||  |||| || ||||| ||  |||| ||||||||||||| || |  ||| |  |    ||    ||| |    | ||||  || ||      |        ||    | | |||        |  | | ||   | || | || |||  || |   
GGGATACTCTTCTATGGAAGCTCAAACTTCTCAAGGCAGGAGCAGCCTATGCAAATTCTCGTCTCCATGCCGTGCAAGCCGAGGTTCTACTTCTTGCCAGgt-ccgtggctacagtatctgctatctatactccatagtttttgtagtccgatacgccgacttctagcctcgtgtttgggtccagagcacagatcaataatgt-tacctgtattcag--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29613578|gb|CB618591.1|CB618591
EST:     ACAAACTCTCGTCTTAATGCAGTACAAGCAGAAATTCTGCTTCTTGCCAG                         TGGCAATGACAATCTTCCTCCAAGTGGAGAAGCAGATCGACTGTTTAAGGC
genomic: ACAAACTCTCGTCTTAATGCAGTACAAGCAGAAATTCTGCTTCTTGCCAGgtgcccttcc ... gggtttacagTGGCAATGACAATCTTCCTCCAAGTGGAGAAGCAGATCGACTGTTTAAGGC
EST: gi|29671668|gb|CB667943.1|CB667943
EST:     ACAAACTCTCGTCTTAATGCAGTACAAGCAGAAATTCTGCTTCTTGCCAG                         TGGCAATGACAATCTTCCTCCAAGTGGAGAAGCAGATCGACTGTTTAAGGC
genomic: ACAAACTCTCGTCTTAATGCAGTACAAGCAGAAATTCTGCTTCTTGCCAGgtgcccttcc ... gggtttacagTGGCAATGACAATCTTCCTCCAAGTGGAGAAGCAGATCGACTGTTTAAGGC
EST: gi|29675941|gb|CB672216.1|CB672216
EST:     ACAAACTCTCGTCTTAATGCAGTACAAGCAGAAATTCTGCTTCTTGCCAG                         TGGCAATGACAATCTTCCTCCAAGTGGAGAAGCAGATCGACTGTTTAAGGC
genomic: ACAAACTCTCGTCTTAATGCAGTACAAGCAGAAATTCTGCTTCTTGCCAGgtgcccttcc ... gggtttacagTGGCAATGACAATCTTCCTCCAAGTGGAGAAGCAGATCGACTGTTTAAGGC
EST: gi|29674811|gb|CB671086.1|CB671086
EST:     ACAAACTCTCGTCTTAATGCAGTACAAGCAGAAATTCTGCTTCTTGCCAG                         TGGCAATGACAATCTTCCTCCAAGTGGAGAAGCAGATCGACTGTTTAAGGC
genomic: ACAAACTCTCGTCTTAATGCAGTACAAGCAGAAATTCTGCTTCTTGCCAGgtgcccttcc ... gggtttacagTGGCAATGACAATCTTCCTCCAAGTGGAGAAGCAGATCGACTGTTTAAGGC
EST: gi|29613651|gb|CB618664.1|CB618664
EST:     ACAAACTCTCGTCTTAATGCAGTACAAGCAGAAATTCTGCTTCTTGCCAG                         TGGCAATGACAATCTTCCTCCAAGTGGAGAAGCAGATCGACTGTTTAAGGC
genomic: ACAAACTCTCGTCTTAATGCAGTACAAGCAGAAATTCTGCTTCTTGCCAGgtgcccttcc ... gggtttacagTGGCAATGACAATCTTCCTCCAAGTGGAGAAGCAGATCGACTGTTTAAGGC