1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGAAGTGCATTGGTGTTTAGCAGTCATAAACATAAGGGACAAAAAGTTTCAATTTCTGGATTCACTTGGCAGCATGGACATGAAGGCATTGAGAACTTTAgtaagtagtataatctgactgtctgattagttgcttggtttgtgtctatacatgagaaaatctgatggcttttgaaattcctttcttaatttctactgaa...
species | Oryza sativa |
transcript | LOC_Os01g25370.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AATTTCTGGATTCACTTGGCAGCATGGACATGAAGGCATTGAGAACTTTA GCAAGGTATCTTGTAGATGAGGTGAAAGATAAGAGTGGCCAACATATTGATEST: gi|218485916|gb|FG967011.1|FG967011
genomic: AATTTCTGGATTCACTTGGCAGCATGGACATGAAGGCATTGAGAACTTTAgtaagtagta ... acttaaccagGCAAGGTATCTTGTAGATGAGGTGAAAGATAAGAGTGGCCAACATATTGAT
EST: AATTTCTGGATTCACTTGGCAGCATGGACATGAAGGCATTGAGAACTTTA GCAAGGTATCTTGTAGATGAGGTGAAAGATAAGAGTGGCCAACATATTGATEST: gi|29662159|gb|CB658434.1|CB658434
genomic: AATTTCTGGATTCACTTGGCAGCATGGACATGAAGGCATTGAGAACTTTAgtaagtagta ... acttaaccagGCAAGGTATCTTGTAGATGAGGTGAAAGATAAGAGTGGCCAACATATTGAT
EST: GGCAGCATGGACATGAAGGCATTGAGAAC-TTA GCAAGGGTATCTTGTAGATGAGGTGAAAGATAAGAGTGGCCAACATATTGAEST: gi|29662158|gb|CB658433.1|CB658433
genomic: GGCAGCATGGACATGAAGGCATTGAGAACTTTAgtaagtagta ... acttaaccagGCAA-GGTATCTTGTAGATGAGGTGAAAGATAAGAGTGGCCAACATATTGA
EST: AATTTCTGGATTCACTTGGCAGCATGGACATGAAGGCATTGAGAACTTTA GCAAGGTATCTTGTAGATGAGGTGAAAGATAAGAGTGGCCAACATATTGATEST: gi|58590052|gb|CF988360.1|CF988360
genomic: AATTTCTGGATTCACTTGGCAGCATGGACATGAAGGCATTGAGAACTTTAgtaagtagta ... acttaaccagGCAAGGTATCTTGTAGATGAGGTGAAAGATAAGAGTGGCCAACATATTGAT
EST: ATGGGCTGGATTCACTTGGCAGCATGGACATGAAGGCATTGAGAACTTTA GCAAGGTATCTTGTAGATGAGGTGAAAGATAAGAGTGGCCAACATATTGATEST: gi|426920|gb|D22996.1|D22996
genomic: AT-TTCTGGATTCACTTGGCAGCATGGACATGAAGGCATTGAGAACTTTAgtaagtagta ... acttaaccagGCAAGGTATCTTGTAGATGAGGTGAAAGATAAGAGTGGCCAACATATTGAT
EST: AATTTCTGGATTCACTTGGCAGCATGGACATGAAGGCATTGAGAACTTTA GCAAGGTATCTTGTAGATGAGGTGAAAGATAAGAGTGGCCAACATATTGATEST: gi|218488315|gb|FG953540.1|FG953540
genomic: AATTTCTGGATTCACTTGGCAGCATGGACATGAAGGCATTGAGAACTTTAgtaagtagta ... acttaaccagGCAAGGTATCTTGTAGATGAGGTGAAAGATAAGAGTGGCCAACATATTGAT
EST: AATTTCTGGATTCACTTGGCAGCATGGACATGAAGGCATTGAGAACTTTA GCAAGGTATCTTGTAGATGAGGTGAAAGATAAGAGTGGCCAACATATTGAT
genomic: AATTTCTGGATTCACTTGGCAGCATGGACATGAAGGCATTGAGAACTTTAgtaagtagta ... acttaaccagGCAAGGTATCTTGTAGATGAGGTGAAAGATAAGAGTGGCCAACATATTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAGTGCATTGGTGTTTAGCAGTCATAAACATAAGGGACAAAAAGTTTCAATTTCTGGATTCACTTGGCAGCATGGACATGAAGGCATTGAGAACTTTAgtaagtagtataatctgactgtctgattagttgcttggtttgtgtctatacatgagaaaatctgatggcttttgaaattcctttcttaatttctactgaa
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