1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TTTCACAAAAAGTGTTCAATATGGTCAAAAGCAATTGAAGCAGCTCCTTGATGGTGAAGAATCCCTTGCAGAATTTCCATATGCAAGCTTTTTACAAACGgtattcctctaccttatttatgataattatagtcatttttccttttatttattcttttattagtattatcctggtgtcagataatgcaccacctaaaaga...
species | Oryza sativa |
transcript | LOC_Os01g25330.3 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATGGTGAAGAATCCCTTGCGGAATTTCCATATGCAAGCTTTTTACAAACG GTAGAAACTGCTGATGACTCAGAACCACTGTTGTCATTACTGGCACCATTTEST: gi|58657073|gb|CK045753.1|CK045753
genomic: ATGGTGAAGAATCCCTTGCAGAATTTCCATATGCAAGCTTTTTACAAACGgtattcctct ... cttttttcagGTAGAAACTTCTGATGACTCAGAACCACTGTTGTCATTACTGGCACCATTT
EST: GAATCCCTTGCAGAATTTCCATATGCAAGCTTTTTACAAACG GTAGAGAGTTCTGATGACTCAGAACCACTGTTGTCATTACTGGCACCATTTEST: gi|58666207|gb|CK054893.1|CK054893
genomic: GAATCCCTTGCAGAATTTCCATATGCAAGCTTTTTACAAACGgtattcctct ... cttttttcagGTAGAAACTTCTGATGACTCAGAACCACTGTTGTCATTACTGGCACCATTT
EST: ATGGTGAAGAATCCCTTGCAGAATTTCCATATGCAAGCTTTTTACAAACG GTAGAAACTTCTGATGACTCAGAACCACTGTTGTCATTACTGGCACCATTTEST: gi|58611780|gb|CK039492.1|CK039492
genomic: ATGGTGAAGAATCCCTTGCAGAATTTCCATATGCAAGCTTTTTACAAACGgtattcctct ... cttttttcagGTAGAAACTTCTGATGACTCAGAACCACTGTTGTCATTACTGGCACCATTT
EST: ATGGTGAAGAATCCCTTGCAGAATTTCCATATGCAAGCTTTTTACAAACG GTAGAAACTGCTGATGACTCAGAACCACTGTTGTCATTACTGGCACCATTT
genomic: ATGGTGAAGAATCCCTTGCAGAATTTCCATATGCAAGCTTTTTACAAACGgtattcctct ... cttttttcagGTAGAAACTTCTGATGACTCAGAACCACTGTTGTCATTACTGGCACCATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCACAAAAAGTGTTCAATATGGTCAAAAGCAATTGAAGCAGCTCCTTGATGGTGAAGAATCCCTTGCAGAATTTCCATATGCAAGCTTTTTACAAACGgtattcctctaccttatttatgataattatagtcatttttccttttatttattcttttattagtattatcctggtgtcagataatgcaccacctaaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT