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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCATTGTCAGATATCTGGTCTTGTGGAGTAATTCTCTATGTAATGCTCGTCGGATACCTTCCCTTTGATGACCGAAATCTTGTTGTCCTGTACCAGAAGgttggttgcaagataaagcatctttacaactttgctcacaaatttcaaatttcagactgtcctgatagtgcgaaattgtcatgtatctttag

Basic information

species Oryza sativa
transcript LOC_Os01g18800.4
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4716471|gb|AU057587.1|AU057587
EST:     GAAATCTTGTTGTCCTGTACCAGAAG                         ATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGG
genomic: GAAATCTTGTTGTCCTGTACCAGAAGgttggttgca ... gtatctttagATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGG
EST: gi|86596798|gb|CI286711.1|CI286711
EST:     TCGGATACCTTCCCTTTGATGACCGAAATCTTGTTGTCCTGTACCAGAAG                         ATTTTCAAGGGGGACACTCAAATCC
genomic: TCGGATACCTTCCCTTTGATGACCGAAATCTTGTTGTCCTGTACCAGAAGgttggttgca ... gtatctttagATTTTCAAGGGGGACACTCAAATCC
EST: gi|58590709|gb|CF989017.1|CF989017
EST:     TCGGATACCTTCCCTTTGATGACCGAAATCTTGTTGTCCTGTACCAGAAG                         ATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGG
genomic: TCGGATACCTTCCCTTTGATGACCGAAATCTTGTTGTCCTGTACCAGAAGgttggttgca ... gtatctttagATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGG
EST: gi|700085|gb|D46376.1|D46376
EST:     TCGGATACCTTCCCTTTGATGACCGAAATCTTGTTGTCCTGTACCAGAAG                         ATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGG
genomic: TCGGATACCTTCCCTTTGATGACCGAAATCTTGTTGTCCTGTACCAGAAGgttggttgca ... gtatctttagATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGG
EST: gi|29624069|gb|CB629080.1|CB629080
EST:     TCGGATACCTTCCCTTTGATGACCGAAATCTTGTTGTCCTGTACCAGAAG                         ATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGG
genomic: TCGGATACCTTCCCTTTGATGACCGAAATCTTGTTGTCCTGTACCAGAAGgttggttgca ... gtatctttagATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGG
EST: gi|29638650|gb|CB643659.1|CB643659
EST:     TCGGATACCTTCCCTTTGATGACCGAAATCTTGTTGTCCTGTACCAGAAG                         ATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGG
genomic: TCGGATACCTTCCCTTTGATGACCGAAATCTTGTTGTCCTGTACCAGAAGgttggttgca ... gtatctttagATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGG
EST: gi|4714882|gb|AU055999.1|AU055999
EST:     CGGATACCTTCCCTTTGGATGACCGAAATCTTGTTGTCCTGTACCAGAAG                         ATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGG
genomic: CGGATACCTTCCCTTTG-ATGACCGAAATCTTGTTGTCCTGTACCAGAAGgttggttgca ... gtatctttagATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGG
EST: gi|88387547|gb|CI583065.1|CI583065
EST:     TCGGATACCTTCCCTTTGATGACCGAAATCTTGTTGTCCTGTACCAGAAG                         ATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGG
genomic: TCGGATACCTTCCCTTTGATGACCGAAATCTTGTTGTCCTGTACCAGAAGgttggttgca ... gtatctttagATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGG
EST: gi|58659268|gb|CK047948.1|CK047948
EST:     TCGGATACCTTCCCTTTGATGACCGAAATCTTGTTGTCCTGTACCAGAAG                         ATTT-CAAGGGGGACACTCAAATCC-AAAGTGGCTT-CACCTAGTGCACGG
genomic: TCGGATACCTTCCCTTTGATGACCGAAATCTTGTTGTCCTGTACCAGAAGgttggttgca ... gtatctttagATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGG
EST: gi|58664713|gb|CK053399.1|CK053399
EST:     TCGGATACCTTCCCTTTGATGACCGAAATCTTGTTGTCCTGTACCAGAAG                         ATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGG
genomic: TCGGATACCTTCCCTTTGATGACCGAAATCTTGTTGTCCTGTACCAGAAGgttggttgca ... gtatctttagATTTTCAAGGGGGACACTCAAATCCCAAAGTGGCTTTCACCTAGTGCACGG