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GGATGTTTGGTCTTTCCTGTTGACCTGTAAGGTGAAATACTGCAGCCTCTATGATCAAGGgtaggtttccttttcatgttcataatccaaaattttaatggtctgtatgcataacttctgttgaatgtttagcgtatcgatacctatggggtcaaaaaat...
species | Oryza sativa |
transcript | LOC_Os01g15490.3 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCTTTCCTGTTGACCTGTAAGGTGAAATACTGCAGCCTCTATGATCAAGG GTATACTTCCATTGGAAGCATATATGATACTGTTCCCAATGCGCTTCTTTGEST: gi|58690912|gb|CK079599.1|CK079599
genomic: TCTTTCCTGTTGACCTGTAAGGTGAAATACTGCAGCCTCTATGATCAAGGgtaggtttcc ... ttgtttctagGTATACTTCCATTGGAAGCATATATGATACTGTTCCCAATGCGCTTCTTTG
EST: TCTTTCCTGTTGACCTGTAAGGTGAAATACTGCAGCCTCTATGATCAAGG GTATACTTCCATTGGAAGCATATATGATACTGTTCCCAATGCGCTTCTTAGEST: gi|58691625|gb|CK080312.1|CK080312
genomic: TCTTTCCTGTTGACCTGTAAGGTGAAATACTGCAGCCTCTATGATCAAGGgtaggtttcc ... ttgtttctagGTATACTTCCATTGGAAGCATATATGATACTGTTCCCAATGCGCTTCTTTG
EST: TCTTTCCTGTTGACCTGTAAGGTGAAATACTGCAGCCTCTATGATCAAGG GTATACTTCCATTGGAAGCATATATGATACTGTTCCCAATGCGCTTCTTAGEST: gi|33793373|gb|CF322568.1|CF322568
genomic: TCTTTCCTGTTGACCTGTAAGGTGAAATACTGCAGCCTCTATGATCAAGGgtaggtttcc ... ttgtttctagGTATACTTCCATTGGAAGCATATATGATACTGTTCCCAATGCGCTTCTTTG
EST: TCTTTCCTGTTGACCTGTAAGGTGAAATACTGCAGCCTCTATGATCAAGG GTATACTTCCATTGGAAGCATATATGATACTGTTCCCAATGCGCTTCTTTGEST: gi|29670775|gb|CB667050.1|CB667050
genomic: TCTTTCCTGTTGACCTGTAAGGTGAAATACTGCAGCCTCTATGATCAAGGgtaggtttcc ... ttgtttctagGTATACTTCCATTGGAAGCATATATGATACTGTTCCCAATGCGCTTCTTTG
EST: TCTTTCCTGTTGACCTGTAAGGTGAAATACTGCAGCCTCTATGATCAAGG GTATACTTCCATTGGAAGCATATATGATACTGTTCCCAATGCGCTTCTTTG
genomic: TCTTTCCTGTTGACCTGTAAGGTGAAATACTGCAGCCTCTATGATCAAGGgtaggtttcc ... ttgtttctagGTATACTTCCATTGGAAGCATATATGATACTGTTCCCAATGCGCTTCTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATGTTTGGTCTTTCCTGTTGACCTGTAAGGTGAAATACTGCAGCCTCTATGATCAAGGgtaggtttccttttcatgttcataatccaaaattttaatggtctgtatgcataacttctgttgaatgtttagcgtatcgatacctatggggtcaaaaaat
- - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaaaa