1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGACTAACACAACATCTGGTGGTAGCTCGAGTCCTGGCGGTGGTCGCTGATTTTTCTGAGCTGAGAGATCTCAGCACAATTTTTCAATCACTTGACACAGgttggtttgaattctccttgatttcccccttattatactatatgtggcgccgctaaagtgctaatgcaatctattctgcacatttccacatcag
species | Oryza sativa |
transcript | LOC_Os01g15460.3 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTTTTCTGAGCTGAGAGATCTCAGCACAATTTTTCAATCACTTGACACAG TTATGATAGGCCCCTCCAATGTGAATAAAAAGCTGTGGCCTCTGTAGAGAAEST: gi|116874997|gb|EC365505.1|EC365505
genomic: TTTTTCTGAGCTGAGAGATCTCAGCACAATTTTTCAATCACTTGACACAGgttggtttga ... tccacatcagTTATGATAGGCCCCTCCAATGTGAATAAAAAGCTGTGGCCTCTGTAGAGAA
EST: TTTTTCTGAGCTGAGAGATCTCAGCACAATTTTTCAATCACTTGACACAG TTATGATAGGCCCCTCCAATGTGAATAAAAAGCTGTGGCCTCTGTAGAGAAEST: gi|33680921|gb|CF309160.1|CF309160
genomic: TTTTTCTGAGCTGAGAGATCTCAGCACAATTTTTCAATCACTTGACACAGgttggtttga ... tccacatcagTTATGATAGGCCCCTCCAATGTGAATAAAAAGCTGTGGCCTCTGTAGAGAA
EST: TTTTTCTGAGCTGAGAGATCTCAGCACAATTTTTCAATCACTTGACACAG TTATGATAGGCCCCTCCAATGTGAATAAAAAGCTGTGGCCTCTGT
genomic: TTTTTCTGAGCTGAGAGATCTCAGCACAATTTTTCAATCACTTGACACAGgttggtttga ... tccacatcagTTATGATAGGCCCCTCCAATGTGAATAAAAAGCTGTGGCCTCTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGACTAACACAACATCTGGTGGTAGCTCGAGTCCTGGCGGTGGTCGCTGATTTTTCTGAGCTGAGAGATCTCAGCACAATTTTTCAATCACTTGACACAGgttggtttgaattctccttgatttcccccttattatactatatgtggcgccgctaaagtgctaatgcaatctattctgcacatttccacatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC