1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATGCGTGCTGGGCTCTTTCATATTTATCTGATGGCACTAATGACAAGATCCAAGCCGTGATTGAAGCTGGTGTTTGCCCCCGTCTTGTGGAGCTTCTCCTgtaagtgacaacattgcattacaattttctgccattttcctttagattcttatttgctactctcattataccctttttaatattttatactgtttacaacatgaag
species | Oryza sativa |
transcript | LOC_Os01g14950.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CAAGCCGTGATTGAAGCTGGTGTTTGCCCCCGTCTTGTGGAGCTTCTCCT CCATCCATCACCTTCAGTGCTTAEST: gi|58673193|gb|CK061879.1|CK061879
genomic: CAAGCCGTGATTGAAGCTGGTGTTTGCCCCCGTCTTGTGGAGCTTCTCCTgtaagtgaca ... caacatgaagCCATCCATCACCTTCAGTGCTTA
EST: GCTGGTGTTTGCCCCCGTCTTGTGGAGCTTCTCCT CCATCCATCACCTTCAGTGCTTATACCCGCACTACGAACTGTTGGAAATATEST: gi|218497818|gb|FG965121.1|FG965121
genomic: GCTGGTGTTTGCCCCCGTCTTGTGGAGCTTCTCCTgtaagtgaca ... caacatgaagCCATCCATCACCTTCAGTGCTTATACCCGCACTACGAACTGTTGGAAATAT
EST: CAAGCCGTGATTGAAGCTGGTGTTTGCCCCCGTCTTGTGGAGCTTCTCCT CCATCCATCACCTTCAGTGCTTATACCCGCAEST: gi|55411455|gb|CV723831.1|CV723831
genomic: CAAGCCGTGATTGAAGCTGGTGTTTGCCCCCGTCTTGTGGAGCTTCTCCTgtaagtgaca ... caacatgaagCCATCCATCACCTTCAGTGCTTATACCCGCA
EST: CAAGCCGTGATTGAAGCTGGTGTTTGCCCCCGTCTTGTGGAGCTTCTCCT CCATCCATCACCTTCAGTGCTTATACCCGCACTACGAACTGTTGGAAATATEST: gi|2443054|gb|C74825.1|C74825
genomic: CAAGCCGTGATTGAAGCTGGTGTTTGCCCCCGTCTTGTGGAGCTTCTCCTgtaagtgaca ... caacatgaagCCATCCATCACCTTCAGTGCTTATACCCGCACTACGAACTGTTGGAAATAT
EST: CAAGCCGTGATTGAAGCTGGTGTTTGCCCCCGTCTTGTGGAGCTTCTCCT CCATCCATCACCTTCAGTGCTTATACCCGCACTACGAACTGTTGGAAATATEST: gi|58588691|gb|CF986999.1|CF986999
genomic: CAAGCCGTGATTGAAGCTGGTGTTTGCCCCCGTCTTGTGGAGCTTCTCCTgtaagtgaca ... caacatgaagCCATCCATCACCTTCAGTGCTTATACCCGCACTACGAACTGTTGGAAATAT
EST: CAAGCCGTGATTGAAGCTGGTGTTTGACCCCGTCTTGTGGAGCTTCTCCT CCATCCATCACCTTCAGTGCTTATACCCGCACTACGAAEST: gi|29640361|gb|CB645370.1|CB645370
genomic: CAAGCCGTGATTGAAGCTGGTGTTTGCCCCCGTCTTGTGGAGCTTCTCCTgtaagtgaca ... caacatgaagCCATCCATCACCTTCAGTGCTTATACCCGCACTACGAA
EST: CAAGCCGTGATTGAAGCTGGTGTTTGCCCCCGTCTTGTGGAGCTTCTCCT CCATCCATCACCTTCAGTGCTTATACCCGCACTACGAACTGTTGGAAATATEST: gi|29643710|gb|CB648717.1|CB648717
genomic: CAAGCCGTGATTGAAGCTGGTGTTTGCCCCCGTCTTGTGGAGCTTCTCCTgtaagtgaca ... caacatgaagCCATCCATCACCTTCAGTGCTTATACCCGCACTACGAACTGTTGGAAATAT
EST: CAAGCCGTGATTGAAGCTGGTGTTTGCCCCCGTCTTGTGGAGCTTCTCCT CCATCCATCACCTTCAGTGCTTATACCCGCACTACGAACTGTTGGAAATATEST: gi|66912883|gb|CX099731.1|CX099731
genomic: CAAGCCGTGATTGAAGCTGGTGTTTGCCCCCGTCTTGTGGAGCTTCTCCTgtaagtgaca ... caacatgaagCCATCCATCACCTTCAGTGCTTATACCCGCACTACGAACTGTTGGAAATAT
EST: CAAGCCGTGATTGAAGCTGGTGTTTGCCCCCGTCTTGTGGAGCTTCTCCT CCATCCATCACCTTCAGTGCTTATACCCGCACTACGAACTGGTGGAAATATEST: gi|58684581|gb|CK073268.1|CK073268
genomic: CAAGCCGTGATTGAAGCTGGTGTTTGCCCCCGTCTTGTGGAGCTTCTCCTgtaagtgaca ... caacatgaagCCATCCATCACCTTCAGTGCTTATACCCGCACTACGAACTGTTGGAAATAT
EST: TTGTGGAGCTTCTCCT CCATCCATCACCTTCAGTGCTTATACCCGCACTACGAACTGTTGGAAATATEST: gi|13806131|gb|AU181373.1|AU181373
genomic: TTGTGGAGCTTCTCCTgtaagtgaca ... caacatgaagCCATCCATCACCTTCAGTGCTTATACCCGCACTACGAACTGTTGGAAATAT
EST: TGAAGCTGGTGTTTGCCCCCGTCTTGTGGAGCTTCTCCT CCATCCATCACCTTCAGTGCTTATACCCGCACTACGAACTGTTGGAAATAT
genomic: TGAAGCTGGTGTTTGCCCCCGTCTTGTGGAGCTTCTCCTgtaagtgaca ... caacatgaagCCATCCATCACCTTCAGTGCTTATACCCGCACTACGAACTGTTGGAAATAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGCGTGCTGGGCTCTTTCATATTTATCTGATGGCACTAATGACAAGATCCAAGCCGTGATTGAAGCTGGTGTTTGCCCCCGTCTTGTGGAGCTTCTCCTgtaagtgacaacattgcattacaattttctgccattttcctttagattcttatttgctactctcattataccctttttaatattttatactgtttacaacatgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT