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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGATCCTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTGgtatgttgatttccacccttaagagtaatttctcagtggtttgatgtatgctgaaattattctagtggtaggctagtcataatgttgacagcataagtgg...

Basic information

species Oryza sativa
transcript LOC_Os01g10840.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g10840.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G045330_T01 (Zea mays), 5'ss of exon 5
-------------------------------------------GTTGATCCTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTGgtatgttgatttccac-ccttaagagtaatt--tctcagtggtttgatgtatgctgaaattattctagtggtaggctagtcataatgttgacagcata-agtgg
                                           |||||||||||||| || || |||||||| ||||||||||| |||||||| |||||||||||||| ||| |   |||  ||  |   |  || ||    |||| | ||||||     | || ||    ||   |  ||| |   || |     |  |||  
AATTAGTTCTGAATTGGTCTCGTCGTCTCTCTTTGATGTACAGGTTGATCCTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGTGCAAAAGTTCTGgtatgttgtttttctttcctcgaggatctgtagtcacatccttttgttttatgct----cttttttaaaaatattgttatcaaaggtttaatcatgtgcagtta

upper sequence: LOC_Os01g10840.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G045330_T02 (Zea mays), 5'ss of exon 6
GTTGATCCTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTGgtatgttgatttccac-ccttaagagtaatt--tctcagtggtttgatgtatgctgaaattattctagtggtaggctagtcataatgttgacagcata-agtgg
|||||||||||||| || || |||||||| ||||||||||| |||||||| |||||||||||||| ||| |   |||  ||  |   |  || ||    |||| | ||||||     | || ||    ||   |  ||| |   || |     |  |||  
GTTGATCCTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGTGCAAAAGTTCTGgtatgttgtttttctttcctcgaggatctgtagtcacatccttttgttttatgct----cttttttaaaaatattgttatcaaaggtttaatcatgtgcagtta

upper sequence: LOC_Os01g10840.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G472625_T01 (Zea mays), 5'ss of exon 6
GTTGATCCTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTGgtatgttgatttccac-ccttaagagtaatt--tctcagtggtttgatgtatgctgaaattattctagtggtaggctagtcataatgttgacagcataagtgg
|||||||||||||| || || |||||||| ||||||||||| || ||||| || ||||||||||| ||| |   |||| ||  |   |  || ||     ||| ||||||||    |   | | |   ||  ||  ||| |   |||      |      
GTTGATCCTCTCACCCACCAGGTCAAGCTCTGTGACTTTGGTAGCGCAAAAGTCCTGgtatgttgtttttctttccttgaggatttgtagtcacatccagttgttgtatgct---ttctcttttgaaatattcttatcaaaggcttgtttttctttcctt

upper sequence: LOC_Os01g10840.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA04G06760.1 (Glycine max), 5'ss of exon 6
GTTGATCCTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTGgtatgttgatttccacccttaagagtaattt-ctcagtggtttgatgtatgctgaaattattctagtggtaggc-tagtcataatgttgacagcataagtgg
|| |||||||| || || ||||| |||||||||||||||||||||||||| ||||| |||||||||  |||    ||     | || | || | |  ||||    |   |   |  |   |  |  |  |  | | || | |  | ||   | | ||  
GTGGATCCTCTTACACACCAAGTGAAGCTATGTGACTTTGGAAGTGCAAAAGTTCTAgtatgttgacctccttattttgctttgatgtacttaattttttgtccaacttttccagcaccattatcttttgtatggacaaagtaataactcaaaatgt--

upper sequence: LOC_Os01g10840.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA13G36570.1 (Glycine max), 5'ss of exon 5
GTTGATCCTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTGgtatgttgatttccacccttaagagtaatttctcagtggtttgatgtatgctgaaattattctagtgg---taggctagtcataatgttgacagcataagtgg
|||||||| ||||| || ||||||||||| ||||| ||||| |||||||| |||||||||||||| | | |  |||   | | | ||    | |   |  |||||||||   ||  |   |||||   | |  || | |||   |   |  | ||    |
GTTGATCCACTCACACACCAAGTCAAGCTCTGTGATTTTGGGAGTGCAAAAGTTCTGgtatgttggtattcttcct---gtgcatttcactactttatacatgtatgctaccatgttaacagtggacgtggaatattaatatcatatgctacctaccccg

upper sequence: LOC_Os01g10840.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA12G15470.2 (Glycine max), 5'ss of exon 6
GTTGATCCTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTGgtatgttgatttccacccttaagagtaatttctcagtggtttgatgtatgc-tgaaattattctagtggtaggctagtcataatgttgacagcataagtgg--
||| ||||||| ||||| ||||| ||||||||||| ||||| ||||| || |||||||||||||| | | ||   ||       |  ||    | | || |||||    ||  |  ||  || |||  | ||| | | |       |  | ||   |   
GTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAAAGTTCTGgtatgttggtctgcattgttcttgtacacatc---attgcttcatgtacatatgccaccatgataatggaggactactaaaatcaaattcttcctaccggaca

upper sequence: LOC_Os01g10840.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA12G33950.1 (Glycine max), 5'ss of exon 6
GTTGATCCTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTGgtatgttgatttccacccttaagagtaatttctcagtggtttgatgtatgctgaaattattctagtgg---taggctagtcataatgttgacagcataagtgg
|||||||  ||||| || ||||||||||| ||||| ||||| |||||||| |||||||||||||  | | |  ||   || | | ||    | |   |  |||||||||   ||  |   |||||   | | ||| | ||    |   |  | ||     
GTTGATCGACTCACACACCAAGTCAAGCTCTGTGATTTTGGGAGTGCAAAAGTTCTGgtatgtttgtattcttcc---agtgcatttcactactttatacatgtatgctaccatgttaacagtggacgtggactattaatgtcatatgctacctacccca

upper sequence: LOC_Os01g10840.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA08G12370.1 (Glycine max), 5'ss of exon 6
GTTGATCCTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTGgtatgttgatttccacccttaagagtaatttctcagtggtttgatgtatgctgaaattattctagtggtaggctagtcataatgttgacagcataagtgg---
||||| ||||| || || || || ||| ||||||| ||||| |||||||| || |||||||||||||||| |  || |  |   |             |  | | ||     || ||  ||   ||  |   ||     | |  |||   ||  | |   
GTTGACCCTCTTACACACCAGGTTAAGATATGTGATTTTGGGAGTGCAAAAGTGCTGgtatgttgatttc-attctcagtacacacacacacacacacttttttttgtgtgcatcatcatatgtgtgtgtctgtg--tgtttcaacattttatcttgtca

upper sequence: LOC_Os01g10840.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA05G29200.1 (Glycine max), 5'ss of exon 5
GTTGATCCTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTGgtatgttgatttccacccttaagagtaatttctcagtggtttgatgtatgctgaaattattctagtggtaggctagtcataatgttg--acagcataagtgg
||||| ||||| || || || || ||| ||||||| |||||||||||||| || |||||||||||||||| |  || |  |   |    |   | || ||    ||  |     |      |||     | |    | || |||  |||   ||| |  
GTTGACCCTCTTACACACCAGGTTAAGATATGTGATTTTGGAAGTGCAAAAGTGCTGgtatgttgatttc-attctcagtacacacactttttttgtgtgcatcatcatatgtgtgcgtgtgtgtgtttcaacattttatcttgttacattgtaattt-

upper sequence: LOC_Os01g10840.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA06G06850.1 (Glycine max), 5'ss of exon 6
GTTGATCCTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTGgtatgttgatttccacccttaagagtaatttctcagtggtttgatgtatgctgaaattattctagtggtaggctagtcataatgttgacagcataagtgg--
|| |||||||| || || ||||| ||||||||||| |||||||||||||| ||||| |||||||||  |||    ||      |  | || | |  ||||    |   |   |  |   |  |  |    || | | || ||  | | |  ||   |  
GTGGATCCTCTTACACACCAAGTGAAGCTATGTGATTTTGGAAGTGCAAAAGTTCTAgtatgttgacctccttattttgcttgatgtacttaattttttgtccaacttttccagcaccattatctttta-tattgacaaagt-aataactcaaaatgtc

upper sequence: LOC_Os01g10840.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA13G30060.2 (Glycine max), 5'ss of exon 6
GTTGATCCTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTGgtatgttgatttccaccct--taagagtaatttctcagtggtttgatgtatgctgaaattattctagtggtaggctagtcataatgttgacagcataagtgg
|| |||||||| || || ||||| ||||||||||| |||||||||||||| ||||| ||| ||    ||   |  |  || |  || |||        | |  |  || |   | |   | | ||  |     ||| ||||  | ||  |   ||    
GTGGATCCTCTTACACACCAAGTGAAGCTATGTGATTTTGGAAGTGCAAAAGTTCTAgtaggtcttattttgctttggtatgcttagttttatgtccatcttttccatacaccattatcttttgtattgacaaagtaataacttagaatgt-caacca-

upper sequence: LOC_Os01g10840.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA06G43620.1 (Glycine max), 5'ss of exon 4
GTTGATCCTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTGgtatgttgatttccacccttaagagtaatttctcagtggtttgatgtatgctgaaattattctagtggtaggctagtcataatgttg--acagcataagtgg
||||| ||||| || || || || ||| ||||||| |||||||||||||| || |||||||||||||||| |  || |  |  ||    |   | || ||    ||  |     |      |||     | |    | || |||  |||   ||| |  
GTTGACCCTCTTACACACCAGGTTAAGATATGTGATTTTGGAAGTGCAAAAGTGCTGgtatgttgatttc-attctcagtacaaacactttttttgtgtgcatcatcatatgtgtgcgtgtgtgtgtttcaacattttatcttgttacattgtaattt-

upper sequence: LOC_Os01g10840.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA15G09090.1 (Glycine max), 5'ss of exon 6
GTTGATCCTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTGgtatgttgatttccaccct--taagagtaatttctcagtggtttgatgtatgctgaaattattctagtggtaggctagtcataatgttgacagcataagtgg
|| |||||||| || || ||||| ||||||||||| |||||||||||||| ||||| ||| ||    ||   |  |  || |  || |||        | |  | |        ||| |  |     | | | |   || |  ||   |    ||    
GTGGATCCTCTTACACACCAAGTGAAGCTATGTGATTTTGGAAGTGCAAAAGTTCTAgtaggtcttattttgctttggtatgcttagttttatgtccatcttttttcacacaccattgtcttttgtatcgacaaagtattaacttagaatgtcaacc--

upper sequence: LOC_Os01g10840.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA06G42840.1 (Glycine max), 5'ss of exon 6
GTTGATCCTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTGgtatgttgatttccacccttaagagtaatttctcagtggtttgatgtatgctgaaattattctagtggtaggctagtcataatgttgacagcataagtgg----
||| ||||||| ||||| ||||| ||||||||||| ||||| ||||| || |||||||||||||| | | ||   ||       || ||    | | || ||| |       |  ||  || |||  | ||| | | |      || ||  | ||||    
GTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAAAGTTCTGgtatgttggtctgcattgttcttgtacatatc---attgcttcatgcacatatgcaccatgataatggaggactactaaaatgacgtactgccca-gtggacat

upper sequence: LOC_Os01g10840.1 (Oryza sativa), 5'ss of exon 6
lower sequence: AT4G18710.1 (Arabidopsis thaliana), 5'ss of exon 5
GTTGATCCTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTGgtatgttgatttccacccttaagagtaatttctcagtggt--ttgatgtatgctgaaattattctagtggtaggctagtcataatgttgacagcataagtgg
||||||||||| ||||||||||||||  | ||||||||||| ||||| ||    || ||| |    ||   ||   |||    | |      || |   ||| ||| | |||  ||  |   | |    |   |    || | ||| |  ||       
GTTGATCCTCTTACTCATCAAGTCAAAATCTGTGACTTTGGCAGTGCGAAACAGCTCgtaagact-ttgtgacatataaactcattcgacttgtagcggttgttgttttctgtgatcttgtcatttactgttgaaatttacttttg-cttcag------

upper sequence: LOC_Os01g10840.1 (Oryza sativa), 5'ss of exon 6
lower sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 6
GTTGATCCTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTGgtatgttgatttccacccttaagagtaatttctcagt---ggtttgatgtatgctgaaattattctagtggtaggctagtcataatgttgacagcataagtgg
|||||||| || ||||| ||||| ||||| |||||||||||||||||||| || || ||||||  ||     |  ||     |    | |||||     |||| | |||    || |  | | ||   |    |  | |   | ||     | || ||  
GTTGATCCACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAgtatgtcaatcctttcattttcatttggcctttcagttttattttgttttatttcaaagtattaccagaacttctttgat-actttattcttctccta-gta-

upper sequence: LOC_Os01g10840.1 (Oryza sativa), 5'ss of exon 6
lower sequence: Vv12s0028g01810.t01 (Vitis vinifera), 5'ss of exon 6
GTTGATCCTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTGgtatgttgatttccacccttaagagtaatttctcagtggtttgatgtatgctgaaattattctagtggtaggctagtcataatgttgacagcataagtgg-----
|||||||||||||| ||||| || ||||| ||||| |||||||||||||||||||||||| ||   ||     || |  | |    ||||   |  |||||||  || |    || ||||  |    | ||  |  |     |  |   ||   | |     
GTTGATCCTCTCACCCATCAGGTTAAGCTTTGTGATTTTGGAAGTGCAAAGGTTCTGgtaagt--gttgaagaccatgtgtgctccttcttcttt-tttgatgcgtgttc--cttcttcttatccctgtctctttctctctctctctttattttttgggctc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|112786757|gb|EE591387.1|EE591387
EST:     CTCTCACTCACCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTG                         GTTCCTGGTGAACCGAACATATCATACATTTGCTCTCGCTATTATCGTGCT
genomic: CTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTGgtatgttgat ... attccaccagGTTCCTGGTGAACCGAACATATCATACATTTGCTCTCGCTATTATCGTGCT
EST: gi|218484555|gb|FG967869.1|FG967869
EST:     CTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTG                         GTTCCTGGTGAACCGAACATATCATACATTTGCTCTCGCTATTATCGTGCT
genomic: CTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTGgtatgttgat ... attccaccagGTTCCTGGTGAACCGAACATATCATACATTTGCTCTCGCTATTATCGTGCT
EST: gi|58653217|gb|CK041897.1|CK041897
EST:     AAAGGTTCTCG                         GTTCCTGGTGAACCGAACATATCATACATTTGCTCTCGCTATTATGGGTG
genomic: AAAGGTTCT-Ggtatgttgat ... attccaccagGTTCCTGGTGAACCGAACATATCATACATTTGCTCTCGCTATTAT-CGTG
EST: gi|58595981|gb|CK006509.1|CK006509
EST:     CTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTG                         GTTCCTGGTGAACCGAACATATCATACATTTGCTCTCGCTATTATCGTGCT
genomic: CTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTGgtatgttgat ... attccaccagGTTCCTGGTGAACCGAACATATCATACATTTGCTCTCGCTATTATCGTGCT
EST: gi|58695322|gb|CK084009.1|CK084009
EST:     CTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTG                         GTTCCTGGTGAACCGAACATATCATACATTTGCTCTCGCTATTATCGTGCT
genomic: CTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTGgtatgttgat ... attccaccagGTTCCTGGTGAACCGAACATATCATACATTTGCTCTCGCTATTATCGTGCT
EST: gi|88329587|gb|CI650042.1|CI650042
EST:     CTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTG                         GTTCCTGGTGAACCGAACATATCATACATTTGCTC
genomic: CTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTGgtatgttgat ... attccaccagGTTCCTGGTGAACCGAACATATCATACATTTGCTC
EST: gi|84117624|gb|CD151391.1|CD151391
EST:     CTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTG                         GTTCCTGGTGAACCGAACATATCATACATTTGCTCTCGCTATTATCGTGCT
genomic: CTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTGgtatgttgat ... attccaccagGTTCCTGGTGAACCGAACATATCATACATTTGCTCTCGCTATTATCGTGCT
EST: gi|218491874|gb|FG949273.1|FG949273
EST:     CTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTG                         GTTCCTGGTGAACCGAACATATCATACATTTGCTCTCGCTATTATCGTGCT
genomic: CTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTGgtatgttgat ... attccaccagGTTCCTGGTGAACCGAACATATCATACATTTGCTCTCGCTATTATCGTGCT
EST: gi|218498171|gb|FG949783.1|FG949783
EST:     CTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTG                         GTTCCTGGTGAACCGAACATATCATACATTTGCTCTCGCTATTATCGTGCT
genomic: CTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTGgtatgttgat ... attccaccagGTTCCTGGTGAACCGAACATATCATACATTTGCTCTCGCTATTATCGTGCT
EST: gi|58668898|gb|CK057584.1|CK057584
EST:     CTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTG                         GTTCCTGGTGAACCGAACATATCATACATTTGCTCTCGCTATTATCGTGCT
genomic: CTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTGgtatgttgat ... attccaccagGTTCCTGGTGAACCGAACATATCATACATTTGCTCTCGCTATTATCGTGCT
EST: gi|29616355|gb|CB621367.1|CB621367
EST:     CTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTG                         GTTCCTGGTGAACCGAACATATCATACATTTGCTCTCGCTATTATCGTGCT
genomic: CTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTGgtatgttgat ... attccaccagGTTCCTGGTGAACCGAACATATCATACATTTGCTCTCGCTATTATCGTGCT
EST: gi|2317560|gb|C22614.1|C22614
EST:     CTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTN                         GTTCCTGGTGAACCGAACATATCATACATTTGCTCTCGCTATTATCGTGCT
genomic: CTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTGgtatgttgat ... attccaccagGTTCCTGGTGAACCGAACATATCATACATTTGCTCTCGCTATTATCGTGCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 74 (upstream exon), 57 (downstream exon)
Score: 36

GTTGATCCTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTGgtatgttgat ... attccaccagGTTCCTGGTGAACCGAACATATCATACATTTGCTCTCGCTATTATCGTGCTCCTGAGCTCATATTTGGTGCAACCGAGTATACAACTTCAATTGACATAT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTGATCCTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTGgtatgttgatttccacccttaagagtaatttctcagtggtttgatgtatgctgaaattattctagtggtaggctagtcataatgttgacagcataagtgg

- - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - -  GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaccct