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GATGTCTGTTGAGATGGTTGCTTGTATAGGTATAGAGGCCATCTCCATACTAGAGAAGATGCATGCTAAAGGgtaactcgacctgctcttcagatgttccgtaagagtgtttcacatggcgtctctgaagttttagctaataaattttgtttatgacag
species | Oryza sativa |
transcript | LOC_Os01g10150.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGTATAGGTATAGAGGCCATCTCCATACTAGAGAAGATGCATGCTAAAGG GTACGTCCATGGTGATGTGAAACCTGAGAACTTTTTGCTTGGTCCTCCAGAEST: gi|29630440|gb|CB635449.1|CB635449
genomic: TGTATAGGTATAGAGGCCATCTCCATACTAGAGAAGATGCATGCTAAAGGgtaactcgac ... tttatgacagGTACGTCCATGGTGATGTGAAACCTGAGAACTTTTTGCTTGGTCCTCCAGA
EST: TGTATAGGTATAGAGGCCATCTCCATACTAGAGAAGATGCATGCTAAAGG GTACGTCCATGGTGATGTGAAACCTGAGAACTTTTTGCTTGGTCCTEST: gi|88573975|gb|CI665744.1|CI665744
genomic: TGTATAGGTATAGAGGCCATCTCCATACTAGAGAAGATGCATGCTAAAGGgtaactcgac ... tttatgacagGTACGTCCATGGTGATGTGAAACCTGAGAACTTTTTGCTTGGTCCT
EST: TGTATAGGTATAGAGGCCATCTCCATACTAGAGAAGATGCATGCTAAAGG GTACGTCCATGGTGATGTGAAACCTGAGAACTTTTTGCTTGGTCCTCCAGAEST: gi|29645031|gb|CB650038.1|CB650038
genomic: TGTATAGGTATAGAGGCCATCTCCATACTAGAGAAGATGCATGCTAAAGGgtaactcgac ... tttatgacagGTACGTCCATGGTGATGTGAAACCTGAGAACTTTTTGCTTGGTCCTCCAGA
EST: TGTATAGGTATCCTTGCCATCTCCATACTAGAGAAGATGCATGCTAAAGG GTACGTCCATGGTGATGTGAAACCTGAGAACTTTTTGCTTGGTCCTCCAGA
genomic: TGTATAGGTATAGAGGCCATCTCCATACTAGAGAAGATGCATGCTAAAGGgtaactcgac ... tttatgacagGTACGTCCATGGTGATGTGAAACCTGAGAACTTTTTGCTTGGTCCTCCAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGTCTGTTGAGATGGTTGCTTGTATAGGTATAGAGGCCATCTCCATACTAGAGAAGATGCATGCTAAAGGgtaactcgacctgctcttcagatgttccgtaagagtgtttcacatggcgtctctgaagttttagctaataaattttgtttatgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG