1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CAGCAGCAACAAAAGCTTGACAGGAGGTCTGCCGGCTTGGAGGAACTGATAATGGGCTGCACGTCTTCGAGCACAAAAGGAgtaagtttctcttgcatttttatttgattgcctcctcagcatggatccaagccgataatttaccagtcagaggctctacgcatgcagtaaagcattcctg...
species | Oryza sativa |
transcript | LOC_Os01g09550.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CGTCTTCGAGCACAAAAGGA GAAGCTTCAATTCCTCACTCCCAAGAGACAGAATGGCCTTACCAGCCATACEST: gi|86487323|gb|CI129956.1|CI129956
genomic: CGTCTTCGAGCACAAAAGGAgtaagtttct ... tctattgcagGAAGCTTCAATTCCTCACTCCCAAGAGACAGAATGGCCTTACCAGCCATAC
EST: CCGGCTTGGAGGAACTGATAATGGGCTGCACGTCTTCGAGCACAAAAGGA GAAGCTTCAATTCCTCACTCCCAAGAGACAGAATGGCCTTACCAGCCATACEST: gi|86479467|gb|CI122100.1|CI122100
genomic: CCGGCTTGGAGGAACTGATAATGGGCTGCACGTCTTCGAGCACAAAAGGAgtaagtttct ... tctattgcagGAAGCTTCAATTCCTCACTCCCAAGAGACAGAATGGCCTTACCAGCCATAC
EST: CCGGCTTGGAGGAACCGATAATGGGCTGCACGTCTTCGAGCACAAAAGGA GAAGCTTCAATTCCTCACTCCCAAGAGACAGAATGTCCTTACCAGCCATACEST: gi|86259391|gb|CI008068.1|CI008068
genomic: CCGGCTTGGAGGAACTGATAATGGGCTGCACGTCTTCGAGCACAAAAGGAgtaagtttct ... tctattgcagGAAGCTTCAATTCCTCACTCCCAAGAGACAGAATGGCCTTACCAGCCATAC
EST: CCGGCTTGGAGGAACTGATAATGGGCTGCACGTCTTCGAGCACAAAAGGA GAAGCTTCAATTCCTCACTCCCAAGAGACAGAATGGCCTTACCAGCCATACEST: gi|86866680|gb|CI343520.1|CI343520
genomic: CCGGCTTGGAGGAACTGATAATGGGCTGCACGTCTTCGAGCACAAAAGGAgtaagtttct ... tctattgcagGAAGCTTCAATTCCTCACTCCCAAGAGACAGAATGGCCTTACCAGCCATAC
EST: CCGGCTTGGAGGAACAGATAATGGGCTGCACGTCTTCGAGCACAAAAGGA GAAGCTTCAATTCCTCACTCCCAAGAGACAGAATGGCCTTACCAGCCATACEST: gi|87007377|gb|CI279048.1|CI279048
genomic: CCGGCTTGGAGGAACTGATAATGGGCTGCACGTCTTCGAGCACAAAAGGAgtaagtttct ... tctattgcagGAAGCTTCAATTCCTCACTCCCAAGAGACAGAATGGCCTTACCAGCCATAC
EST: CCGGCTTGGAGGAACTGATAATGGGCTGCACGTCTTCGAGCACAAAAGGA GAAGCTTCAATTCCTCACTCCCAAGAGACAGAATGGCCTTACCAGCCATACEST: gi|88957229|gb|CI095214.1|CI095214
genomic: CCGGCTTGGAGGAACTGATAATGGGCTGCACGTCTTCGAGCACAAAAGGAgtaagtttct ... tctattgcagGAAGCTTCAATTCCTCACTCCCAAGAGACAGAATGGCCTTACCAGCCATAC
EST: AGCACAAAAGGA GAAGCTTCAATTCCTCACTCCCAAGAGACAGAATGGCCTTACCAGCCATAC
genomic: AGCACAAAAGGAgtaagtttct ... tctattgcagGAAGCTTCAATTCCTCACTCCCAAGAGACAGAATGGCCTTACCAGCCATAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGCAGCAACAAAAGCTTGACAGGAGGTCTGCCGGCTTGGAGGAACTGATAATGGGCTGCACGTCTTCGAGCACAAAAGGAgtaagtttctcttgcatttttatttgattgcctcctcagcatggatccaagccgataatttaccagtcagaggctctacgcatgcagtaaagcattcctg
- - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - GGAGGA