Sequence
atgc intronic sequence ATGC exonic sequenceGGAAATGAGGCTCCAGCTCCATTCATGACATTTCAGTCCACAGGTTTCCCTCCAGAGATTCTAAGGGAGgtaagtgcacacaatttacatgactatttaatgcattttcttgtatccttctcgaaagaaattaggaggtcattgtgcgttcatactacgtatgtgataa...
Basic information
species | Oryza sativa |
transcript | LOC_Os01g07740.3 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os01g07740.3 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G462134_T01 (Zea mays), 5'ss of exon 2
GGAAATGAGGCTCCAGCTCCATTCATGACATTTCAGTCCACAGGTTTCCCTCCAGAGATTCTAAGGGAGgtaagtgcacacaatttacatgactatttaatgcattttcttgtatccttctcgaaagaaattaggaggtcattgtgcgttcatactacgtatgtgataa-
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GGCAATGAGGCACCTGCACCATTCATGACATTTCAATCCACAGGCTTACCATTAGACATTCTAAGGGAGgtaggtctacacaatgtttaggaatattaatgtcctttttttggatacctttccgatgtgaccaggtggccatcgtgcatccattgtacgtatgc-atgat
upper sequence: LOC_Os01g07740.3 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G481227_T01 (Zea mays), 5'ss of exon 2
GGAAATGAGGCTCCAGCTCCATTCATGACATTTCAGTCCACAGGTTTCCCTCCAGAGATTCTAAGGGAGgtaagtgcacacaatttacatgactatttaatgcattttcttgtatccttctcgaaagaaattaggaggtcattgtgcgttcatactacgtatgtgataa-
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GGCAATGAGGCACCTGCACCATTCATGACATTTCAATCCACAGGCTTCCCATTAGACATTCTAAGGGAGgtaggtctacacaatgtttaggaatattaatgtcatttttttggatccctttccgatgtgactaggtggtcatcgtgcatacattgtacgtatgc-atgat
upper sequence: LOC_Os01g07740.3 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G066440_T01 (Zea mays), 5'ss of exon 5
GGAAATGAGGCTCCAGCTCCATTCATGACATTTCAGTCCACAGGTTTCCCTCCAGAGATTCTAAGGGAGgtaagtgcacacaatttacatgactatttaatgcattttcttgtatccttctcgaaagaaattaggaggtcattgtgcgttcatactacgtatgtgataa--
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GGCAACGAGTCACCTGCACCATTCATGACATTTCAGTCCACATGCTTCCCATCAGATATTCTAAGGGAGgtaagtctacgcaatgcgtagcaatatc-aatgtgcttttttggatacctttctgatggaaccaggtggccatcgtgcatccattgtatgtatgc-atgattMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|2310452|gb|C26607.1|C26607EST: CATTCATGACATTTCAGTCCACAGGTTTCCCTCCAGAGATTCTAAGGGAG GTACAGCAAGCGGGATTCTCTGCACCAACTCCTATCCAAGCTCAATCATGG
genomic: CATTCATGACATTTCAGTCCACAGGTTTCCCTCCAGAGATTCTAAGGGAGgtaagtgcac ... gtttctgtagGTACAGCAAGCGGGATTCTCTGCACCAACTCCTATCCAAGCTCAATCATGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAAATGAGGCTCCAGCTCCATTCATGACATTTCAGTCCACAGGTTTCCCTCCAGAGATTCTAAGGGAGgtaagtgcacacaatttacatgactatttaatgcattttcttgtatccttctcgaaagaaattaggaggtcattgtgcgttcatactacgtatgtgataa
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