1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TTTCACAATTCTGAGAGGAGGTCGGTGTACTTCAATGGATATGAGTTTTATCCTATGTATAAGCGCTTGCATCCATTGGAGACATACAGAAAACTATGGGgtacattctacacatatcttattttctgacctttctttaatatttagaagtttgttaaattttcatctaccactttagttttttgttggttgatgattct...
species | Oryza sativa |
transcript | LOC_Os01g05510.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCCTATGTATAAGCGCTTGCATCCATTGGAGACATACAGAAAACTATGGG TTGTGGAAGTGAAACCATTTGAAGATGCTTCTTTTAATCCTGTAGAGGATGEST: gi|58586705|gb|CF985013.1|CF985013
genomic: TCCTATGTATAAGCGCTTGCATCCATTGGAGACATACAGAAAACTATGGGgtacattcta ... ccctttctagTTGTGGAAGTGAAACCATTTGAAGATGCTTCTTTTAATCCTGTAGAGGATG
EST: TCCTATGTATAAGTGCTTGCATCCATTGGAGACATACAGAAAACTATGGG TTGTGGAAGTGAAACCATTTGAAGATGCTTCTTTTAATCCTGTAGAGGATGEST: gi|58689882|gb|CK078569.1|CK078569
genomic: TCCTATGTATAAGCGCTTGCATCCATTGGAGACATACAGAAAACTATGGGgtacattcta ... ccctttctagTTGTGGAAGTGAAACCATTTGAAGATGCTTCTTTTAATCCTGTAGAGGATG
EST: TCCTATGTATAAGTGCTTGCATCCATTGGAGACATACAGAAAACTATGGG TTGTGGAAGTGAAACCATTTGAAGATGCTTCTTTTAATCCTGTAGAGGATG
genomic: TCCTATGTATAAGCGCTTGCATCCATTGGAGACATACAGAAAACTATGGGgtacattcta ... ccctttctagTTGTGGAAGTGAAACCATTTGAAGATGCTTCTTTTAATCCTGTAGAGGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCACAATTCTGAGAGGAGGTCGGTGTACTTCAATGGATATGAGTTTTATCCTATGTATAAGCGCTTGCATCCATTGGAGACATACAGAAAACTATGGGgtacattctacacatatcttattttctgacctttctttaatatttagaagtttgttaaattttcatctaccactttagttttttgttggttgatgattct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA