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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGGATCAAGGATTGGACTAATGTGGTTGTTGCCTATGAACCTGTGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttcttatattgataagcacacaaagtgttcattcatgaacttctgcacgttccataattgttacctatgctctagataaaatatcttgtttaaacaaccatctggtttgtattattgtatcag

Basic information

species Oryza sativa
transcript LOC_Os01g05490.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g05490.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G370275_T01 (Zea mays), 5'ss of exon 5
AAAGGATCAAGGATTGGACTAATGTGGTTGTTGCCTATGAACCTGTGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttcttata------ttgataagcacacaaagtgttcattcatgaacttctgcac---gttccataattgttacc----tatgct------ctagataaaata-tcttgtttaaacaaccatctggtttgtattattgtatcag
| | ||||||||| ||||  || || ||||||||||||||||| || ||||| |||||||||||||||||||| || |||| ||| || || ||||||||||| || ||      |  |   |  || | | | ||   |  |  | |  ||  |   | | ||  | | |||      |||| |      ||| | |  ||  | || |||   ||||  || | || |||||||  |  |||
AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttttctagaagtctctactggttcatatatttttatctgtttcagtgttgggctgtgatgcactactattataaaaatatgttgatctgctacacattatccttttctttgtgcaacgctcagattcgtattatgttcccag

upper sequence: LOC_Os01g05490.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G030784_T02 (Zea mays), 5'ss of exon 8
AAAGGATCAAGGATTGGACTAATGTGGTTGTTGCCTATGAACCTGTGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttctt-------atattgataagcacacaaagtgttcattcatgaacttctgcac------gttccataattgttacctatgct------ctagataaaata-tcttgtttaaacaaccatctggtttgtattattgtatcag
| | ||||||||| ||||  || || ||||||||||||||||| || ||||| |||||||||||||||||||| || |||| ||| || || ||||||||||| ||        | |  |   |  || | | | ||   |  |  | |  ||  |      |  | |  ||| | |  |||| |      ||| | |  ||  | || |||   ||||  ||   || |||||||  |  |||
AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagtttttttctagaagtctctactggttcatatatttttatctgtttcagtgttgggctgtgatgcactactattataaaatatgttgatctgctacacattatccttttctttgtgcaacgctcaaattcgtattatgttcccag

upper sequence: LOC_Os01g05490.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G435244_T01 (Zea mays), 5'ss of exon 5
AAAGGATCAAGGATTGGACTAATGTGGTTGTTGCCTATGAACCTGTGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttcttata------ttgataagcacacaaagtgttcattcatgaacttctgcac---gttccataattgttacc----tatgct------ctagataaaata-tcttgtttaaacaaccatctggtttgtattattgtatcag
| | ||||||||| ||||  || || ||||||||||||||||| || ||||| |||||||||||||||||||| || |||| ||| || || ||||||||||| || ||      |  |   |  || | | | ||  ||  |  | |  ||  |   | | ||  | | |||      |||| |      ||| | |  ||  | || |||   ||||  || | || |||||||  |  |||
AGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAAgtaagttttttctagaagtctctactggttcatatatttttatttgttttagtgttgggctgtgatgcactactattataaaaatatgttgatctgctacacattatccttttctttgtgcaacgctcagattcgtattatgttcccag

upper sequence: LOC_Os01g05490.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G018177_T01 (Zea mays), 5'ss of exon 6
AAAGGATCAAGGATTGGACTAATGTGGTTGTTGCCTATGAACCTGTGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtt---tcttatattgata-agcacacaa------agtgttcattcatgaacttc----------tgc-acgttccataattgt-----tacctatgctctagataaaatatcttgtt---taaacaaccatctggtttgtattattgta-tcag--------------------------
| | ||||||||| ||||  || || ||| ||||||||||||| || ||||| ||||||||||| ||||| || || |||| ||| || || ||||||||||   |  | | ||| || | | | | |      | |||   || ||    |||          ||| | |  | || ||| |     |    ||   ||| ||    |||| | ||   |   ||||  || | ||||| ||||| |  | |                           
AGAAGATCAAGGACTGGAGCAACGTTGTTCTTGCCTATGAACCAGTCTGGGCTATTGGAACTGGCAAAGTCGCCACCCCAGCTCAGGCTCAGGAAgtaagttctgttctctcttggtacaactctctactggttaatgtatttttatctgtttcaatattgggctgcgatgcactatgattataaatatgttgatctgctacatgcgttatccttttctctgtgcaacactcagatttgtgttattatggttaacactcagatttgcactatgttcccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86524655|gb|CI164861.1|CI164861
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCGAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|425824|gb|D22502.1|D22502
EST:     TGTTGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|88844369|gb|CI005742.1|CI005742
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|33686007|gb|CF314246.1|CF314246
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|89176167|gb|CI043188.1|CI043188
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|30227021|gb|CB964913.1|CB964913
EST:     GGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: GGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|396941354|gb|HO188563.1|HO188563
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|33807203|gb|CF329482.1|CF329482
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCT-GCTGCTAATGTCAGTGC
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGC
EST: gi|88843726|gb|CI010984.1|CI010984
EST:     CACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: CACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|88481322|gb|CI418593.1|CI418593
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCNCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|33691196|gb|CF319435.1|CF319435
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|396941501|gb|HO188710.1|HO188710
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|11233261|gb|AU164703.1|AU164703
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|33807205|gb|CF329483.1|CF329483
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCT-GCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|9348994|gb|AU097704.1|AU097704
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|86522403|gb|CI162609.1|CI162609
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|86883540|gb|CI338080.1|CI338080
EST:     CATTGGAAACTGNTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: CATTGG-AACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|14981165|gb|BI305843.1|BI305843
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|27577728|gb|CB000423.1|CB000423
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|218483167|gb|FG943231.1|FG943231
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTTATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|11173127|gb|AU164626.1|AU164626
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|86513119|gb|CI155752.1|CI155752
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|58692189|gb|CK080876.1|CK080876
EST:     GATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: GATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|33685619|gb|CF313858.1|CF313858
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGC
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGC
EST: gi|88263078|gb|CI366852.1|CI366852
EST:     TGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|4715957|gb|AU057073.1|AU057073
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGC-TGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|27578369|gb|CB001064.1|CB001064
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|89166709|gb|CI103995.1|CI103995
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|58587008|gb|CF985316.1|CF985316
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCGAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|86525455|gb|CI165661.1|CI165661
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|30227561|gb|CB965453.1|CB965453
EST:     GGTAAAGTTGCTACACCAGATTCAAGCANCAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGT
genomic: GGTAAAGTTGCTACACCAGA-TCAAGCA-CAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGT
EST: gi|86252587|gb|CI003923.1|CI003923
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|88836907|gb|CI008343.1|CI008343
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|300215888|gb|HO088514.1|HO088514
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|27578353|gb|CB001048.1|CB001048
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|86252828|gb|CI010310.1|CI010310
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|88843789|gb|CI011047.1|CI011047
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|86261062|gb|CI004627.1|CI004627
EST:     CACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: CACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|58691396|gb|CK080083.1|CK080083
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|33687308|gb|CF315547.1|CF315547
EST:     GTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: GTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|33666017|gb|CF296984.1|CF296984
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGNTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|427034|gb|D23110.1|D23110
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|86538152|gb|CI178358.1|CI178358
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|38480413|gb|CF964502.1|CF964502
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCGAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|66922499|gb|CX109347.1|CX109347
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|55431263|gb|CV728641.1|CV728641
EST:     ACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: ACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|163928075|gb|EG712979.1|EG712979
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|58676943|gb|CK065630.1|CK065630
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|55442464|gb|CV734550.1|CV734550
EST:     GTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: GTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|86521913|gb|CI162119.1|CI162119
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|319908632|gb|HS977760.1|HS977760
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|33692822|gb|CF321061.1|CF321061
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|88841370|gb|CI005450.1|CI005450
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|88217761|gb|CI217610.1|CI217610
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|38473212|gb|CF957344.1|CF957344
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|88907449|gb|CI090243.1|CI090243
EST:     AAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: AAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|30226751|gb|CB964643.1|CB964643
EST:     GGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: GGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|33691197|gb|CF319436.1|CF319436
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGC
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGC
EST: gi|30227085|gb|CB964977.1|CB964977
EST:     GGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: GGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|30226725|gb|CB964617.1|CB964617
EST:     TTGCTACACCAGATCTAGCACTAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|88486198|gb|CI423469.1|CI423469
EST:     GGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: GGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|33662374|gb|CF293341.1|CF293341
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGC
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGC
EST: gi|33692821|gb|CF321060.1|CF321060
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTG
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTG
EST: gi|218478150|gb|FG948857.1|FG948857
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|313081048|gb|HO213634.1|HO213634
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|88991556|gb|CI019734.1|CI019734
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|27576217|gb|CA998911.1|CA998911
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|88966077|gb|CI012953.1|CI012953
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
EST: gi|88832684|gb|CI008280.1|CI008280
EST:     TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAA                         GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT
genomic: TGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttct ... attgtatcagGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAGGATCAAGGATTGGACTAATGTGGTTGTTGCCTATGAACCTGTGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAAGAAgtaagtttcttatattgataagcacacaaagtgttcattcatgaacttctgcacgttccataattgttacctatgctctagataaaatatcttgtttaaacaaccatctggtttgtattattgtatcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA