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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACATTCCAAGATATACATTTAGCTGGCTTGTAGAGCCAATGTGGCAAGTCATAAgtaagcattatactcccatttcatttatactttcataaacagtcagatttttatgtgatgaaaacattgattcgatccggcaaacag

Basic information

species Oryza sativa
transcript LOC_Os01g04920.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g04920.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G477503_T01 (Zea mays), 5'ss of exon 5
ATACATTCCAAGATATACATTTAGCTGGCTTGTAGAGCCAATGTGGCAAGTCATAAgtaagcatta------tactcccatttcatttatactttcataaacagtcagatttttatgtg---atgaaa-acattgattc--gatccggcaaacag----------
|||||| || ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||       || | |||  |||| | | ||||| |||||||| |  |   |   ||   |||||| ||  ||||||  | ||  |  |              
ATACATACCTAGATATACATTTAGCTGGCTTGTGGAGCCAATGTGGCAAGTCATAAgtgagcatttgcattttagttccacctcatctcttctttcctaaacagtaacttgcatgcctgtctatgaaacacgctgattcttggtcgtgttattcccgaaacacag

upper sequence: LOC_Os01g04920.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA18G42540.1 (Glycine max), 5'ss of exon 6
ATACATTCCAAGATATACATTTAGCTGGCTTGTAGAGCCAATGTGGCAAGTCATAAgtaagcattatactcccatttcatttatactttcataaacagtcagatttttatgtgatgaaaacattgattc-gatccggcaaacag
 ||||||||||||||||| ||||||||||| ||  | || ||||||    ||||||||| |   || |||    | |   |||  | |||  |    | |  |  | |  ||||  | |||||  |||  | |     | | ||
GTACATTCCAAGATATACCTTTAGCTGGCTGGTGAAACCCATGTGGTTGATCATAAgtatg---tacactt---tcttgcttactccttccaatttggactcaaatattggtgagcataacataaattttggtggtttatatag

upper sequence: LOC_Os01g04920.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GLYMA07G17680.1 (Glycine max), 5'ss of exon 5
ATACATTCCAAGATATACATTTAGCTGGCTTGTAGAGCCAATGTGGCAAGTCATAAgtaagcattatactcccatttcatttatactttcataaacagtcagatttttatgtgatgaaaacattgattcgatccggcaaacag
 ||||||||||||||||| ||||||||||| ||  | || ||||||    ||||||||| |   || |||    | |   ||| |||||  | ||   |  || |  ||| || |||| | |   | |      ||  |  ||
GTACATTCCAAGATATACCTTTAGCTGGCTGGTGAAACCCATGTGGTTGATCATAAgtatg---tacactt---tcttgcttacacttt--tcaat--ttggactcatat-tggtgaacataacaaattttggtggtta-tag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4715717|gb|AU056833.1|AU056833
EST:     TCCAAGATATACATTTAGCTGGCTTGTAGAGCCAATGTGGCAAGTCATAA                         GGTTCCTTCATAGAGCTGCTGATCTAACATTAGTGCCATCTGTTGCTATCA
genomic: TCCAAGATATACATTTAGCTGGCTTGTAGAGCCAATGTGGCAAGTCATAAgtaagcatta ... cggcaaacagGGTTCCTTCATAGAGCTGCTGATCTAACATTAGTGCCATCTGTTGCTATCA