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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTACCTGAAAGATCTTATGGAACCGACTGCCGCATATATGTACCTGATCATCCGAAAAGCAGGTTTAACAATGTTTATgtatgactccattcaccaacttgcttctcctttttgttctatttgatttaccttaaaactccagttctgcaaagtcttggagatgcttcaagttactgatttgaatataggtttctctaggag

Basic information

species Oryza sativa
transcript LOC_Os01g02890.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g02890.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G095757_T02 (Zea mays), 5'ss of exon 6
AATTACCTGAAAGATCTTATGGAACCGACTGCCGCATATATGTACCTGATCATCCGAAAAGCAGGTTTAACAATGTTTATgtatga---ctccattcaccaacttgcttctcctttttgttctatttgatttaccttaaaactccagttctgcaa-----agtcttggagatgcttcaagttactgatttgaatataggtttctctaggag
|||| |||||||||||||||||||| || || ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||   || ||||||||||||| ||| |||||||||||| ||||  |||  | || |  ||    |  |||      | | ||  | | |||||||||||||||||||||||||| ||| |||||   
AATTGCCTGAAAGATCTTATGGAACTGATTGTCGCATATATGTCCCTGATCATCCAAAAAGCAGGTTTAACAATGTTTATgtatgatgacttcattcaccaacttactt-tcctttttgttcaatttcgtttctcatatacttctgactaagcagtcttgactattcaatacgcttcaagttactgatttgaatatagttttttctag---

upper sequence: LOC_Os01g02890.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G095757_T02 (Zea mays), 5'ss of exon 6
AATTACCTGAAAGATCTTATGGAACCGACTGCCGCATATATGTACCTGATCATCCGAAAAGCAGGTTTAACAATGTTTATgtatga---ctccattcaccaacttgcttctcctttttgttctatttgatttaccttaaaactccagttctgcaa-----agtcttggagatgcttcaagttactgatttgaatataggtttctctaggag
|||| |||||||||||||||||||| || || ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||   || ||||||||||||| ||| |||||||||||| ||||  |||  | || |  ||    |  |||      | | ||  | | |||||||||||||||||||||||||| ||| |||||   
AATTGCCTGAAAGATCTTATGGAACTGATTGTCGCATATATGTCCCTGATCATCCAAAAAGCAGGTTTAACAATGTTTATgtatgatgacttcattcaccaacttactt-tcctttttgttcaatttcgtttctcatatacttctgactaagcagtcttgactattcaatacgcttcaagttactgatttgaatatagttttttctag---

upper sequence: LOC_Os01g02890.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G110834_T02 (Zea mays), 5'ss of exon 6
AATTACCTGAAAGATCTTATGGAACCGACTGCCGCATATATGTACCTGATCATCCGAAAAGCAGGTTTAACAATGTTTATgtatga---ctccattcaccaacttgcttctcctttttgttctatttgatttaccttaaaactccagttctgca-----aagtcttggagatgcttcaagttactgatttgaatataggtttctctaggag
|||||||||||||||| |||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||   || |||||||| || | ||| |||||||||||| ||||  |||  | || |  |     |  |||      | | ||    |||||||||||||||||||||||||||| ||| |||||   
AATTACCTGAAAGATCATATGGAACTGATTGCCGCATATATGTACCTGACCATCCGAAAAGCAGGTTTAACAATGTTTATgtatgatgacttcattcaccgacctactt-tcctttttgttcaatttcgtttctcatatacttttgactaagcactcttgactattcattatgcttcaagttactgatttgaatatagttttttctag---

upper sequence: LOC_Os01g02890.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G110834_T02 (Zea mays), 5'ss of exon 6
AATTACCTGAAAGATCTTATGGAACCGACTGCCGCATATATGTACCTGATCATCCGAAAAGCAGGTTTAACAATGTTTATgtatga---ctccattcaccaacttgcttctcctttttgttctatttgatttaccttaaaactccagttctgca-----aagtcttggagatgcttcaagttactgatttgaatataggtttctctaggag
|||||||||||||||| |||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||   || |||||||| || | ||| |||||||||||| ||||  |||  | || |  |     |  |||      | | ||    |||||||||||||||||||||||||||| ||| |||||   
AATTACCTGAAAGATCATATGGAACTGATTGCCGCATATATGTACCTGACCATCCGAAAAGCAGGTTTAACAATGTTTATgtatgatgacttcattcaccgacctactt-tcctttttgttcaatttcgtttctcatatacttttgactaagcactcttgactattcattatgcttcaagttactgatttgaatatagttttttctag---

upper sequence: LOC_Os01g02890.1 (Oryza sativa), 5'ss of exon 6
lower sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 7
AATTACCTGAAAGATCTTATGGAACCGACTGCCGCATATATGTACCTGATCATCCGAAAAGCAGGTTTAACAATGTTTATgtatgactccattca-ccaacttgcttctcctttttgttctatttgatttacc-ttaaaactccagttctgcaaagtcttggagatgcttcaagttactgatttgaatataggtttctctaggag
|| | ||||||||||| |||||  | || |||||||| ||||| |||||  |||| |  ||||||||||| ||||||||||||||| | |   ||  | | |  ||||    || | || | | || |  ||  ||        |  ||   |   | |||| || ||   |   | |||||||   |   | | | |||||   
AACTTCCTGAAAGATCGTATGGTGCTGATTGCCGCATTTATGTGCCTGAAAATCCAACCAGCAGGTTTAAGAATGTTTATgtatgatttctcacaatccattcacttcaaaattgt-ttgtgtatgttccactgttcctgacatacatcaatatgatattgg-gaggca--agacttctgatttt--ttctgttgtttctag---