1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAAATCCCATTCAAGGGACAAAGATGGTGAGCTGGGCGATGATGTGTTTGATGAAGACCTGGAGGATGAGGAAACAGAAAATCCTGAGCTAGCTGCTAAGgtttaatgataacattttgttggacatagatttggttttgtttgtttcagcaataactaaaacatgtctttcaacctcaatgcag
species | Oryza sativa |
transcript | LOC_Os01g02090.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATGAAGACCTGGAGGATGAGGAAACAGAAAATCCTGAGCTAGCTGCTAAG CCTGTTTATGTCAAGGATGACTTTTTTGATTCCCTCACTAGTGGAACATTTEST: gi|86437498|gb|CI119220.1|CI119220
genomic: ATGAAGACCTGGAGGATGAGGAAACAGAAAATCCTGAGCTAGCTGCTAAGgtttaatgat ... ctcaatgcagCCTGTTTATGTCAAGGATGACTTTTTTGATTCCCTCACTAGTGGAACATTT
EST: CTGGAGGATGAGGAAACAGAAAATCCTGAGCTAGCTGCTAAG CCTGTTTATGTCAAGGATGACTTTTTTGATTCCCTCACTAGTGGAACATTTEST: gi|29668186|gb|CB664461.1|CB664461
genomic: CTGGAGGATGAGGAAACAGAAAATCCTGAGCTAGCTGCTAAGgtttaatgat ... ctcaatgcagCCTGTTTATGTCAAGGATGACTTTTTTGATTCCCTCACTAGTGGAACATTT
EST: ATGAAGACCTGGAGGATGAGGAAACAGAAAATCCTGAGCTAGCTGCTAAG CCTGTTTATGTCAAGGATGACTTTTTTGATTCCCTCACTAGTGGAACATTTEST: gi|29670778|gb|CB667053.1|CB667053
genomic: ATGAAGACCTGGAGGATGAGGAAACAGAAAATCCTGAGCTAGCTGCTAAGgtttaatgat ... ctcaatgcagCCTGTTTATGTCAAGGATGACTTTTTTGATTCCCTCACTAGTGGAACATTT
EST: ATGAAGACCTGGAGGATGAGGAAACAGAAAATCCTGAGCTAGCTGCTAAG CCTGTTTATGTCAAGGATGACTTTTTTGATTCCCTCACTAGTGGAACATTTEST: gi|24208749|gb|AU225776.1|AU225776
genomic: ATGAAGACCTGGAGGATGAGGAAACAGAAAATCCTGAGCTAGCTGCTAAGgtttaatgat ... ctcaatgcagCCTGTTTATGTCAAGGATGACTTTTTTGATTCCCTCACTAGTGGAACATTT
EST: ATGAAGACCTGGAGGATGAGGAAACAGAAAATCCTGAGCTAGCTGCTAAG CCTGTTTATGTCAAGGATGACTTTTTTGATTCCCTCACTAGTGGAACATTTEST: gi|29670777|gb|CB667052.1|CB667052
genomic: ATGAAGACCTGGAGGATGAGGAAACAGAAAATCCTGAGCTAGCTGCTAAGgtttaatgat ... ctcaatgcagCCTGTTTATGTCAAGGATGACTTTTTTGATTCCCTCACTAGTGGAACATTT
EST: ATGAAGACCTGGAGGATGAGGAAACAGAAAATCCTGAGCTAGCTGCTAAG CCTGTTTATGTCAAGGATGACTTTTTTGATTCCCTCACTAGTGGAACATTTEST: gi|8857577|gb|AU094895.1|AU094895
genomic: ATGAAGACCTGGAGGATGAGGAAACAGAAAATCCTGAGCTAGCTGCTAAGgtttaatgat ... ctcaatgcagCCTGTTTATGTCAAGGATGACTTTTTTGATTCCCTCACTAGTGGAACATTT
EST: TAGCTGCTAAAG CCTGTTTATGTCAAGGATGACNNNNNNNGATTCCCTCCACTAGTGGAACAEST: gi|29636684|gb|CB641693.1|CB641693
genomic: TAGCTGCT-AAGgtttaatgat ... ctcaatgcagCCTGTTTATGTCAAGGATGAC-TTTTTTGATTCCCT-CACTAGTGGAACA
EST: ATGAAGACCTGGAGGATGAGGAAACAGAAAATCCTGAGCTAGCTGCTAAG CCTGTTTATGTCAAGGATGACTTTTTTGATTCCCTCACTAGTGGAACATTTEST: gi|29668187|gb|CB664462.1|CB664462
genomic: ATGAAGACCTGGAGGATGAGGAAACAGAAAATCCTGAGCTAGCTGCTAAGgtttaatgat ... ctcaatgcagCCTGTTTATGTCAAGGATGACTTTTTTGATTCCCTCACTAGTGGAACATTT
EST: ATGAAGACCTGGAGGATGAGGAAACAGAAAATCCTGAGCTAGCTGCTAAG CCTGTTTATGTCAAGGATGACTTTTTTGATTCCCTCACTAGTGGAACATTTEST: gi|29626801|gb|CB631812.1|CB631812
genomic: ATGAAGACCTGGAGGATGAGGAAACAGAAAATCCTGAGCTAGCTGCTAAGgtttaatgat ... ctcaatgcagCCTGTTTATGTCAAGGATGACTTTTTTGATTCCCTCACTAGTGGAACATTT
EST: ACAGAAAATCCTGAGCTAGCTGCTAAG CCTGTTTATGTCAAGGATGACTTTTTTGATTCCCTCACTAGTGGAACATTTEST: gi|88675876|gb|CI729448.1|CI729448
genomic: ACAGAAAATCCTGAGCTAGCTGCTAAGgtttaatgat ... ctcaatgcagCCTGTTTATGTCAAGGATGACTTTTTTGATTCCCTCACTAGTGGAACATTT
EST: ATGAAGACCTGGAGGATGAGGAAACAGAAAATCCTGAGCTAGCTGCTAAG CCTGTTTATGTCAAGGATGACTTCTTTGATTCCCTCACTAGTGGAACATCTEST: gi|88673022|gb|CI727137.1|CI727137
genomic: ATGAAGACCTGGAGGATGAGGAAACAGAAAATCCTGAGCTAGCTGCTAAGgtttaatgat ... ctcaatgcagCCTGTTTATGTCAAGGATGACTTTTTTGATTCCCTCACTAGTGGAACATTT
EST: ATGAAGACCTGGAGGATGAGGAAACAGAAAATCCTGAGCTAGCTGCTAAG CCTGTTTATGTCAAGGATGACTTCCTCGATTCCCTCACTAGTGGAACATTTEST: gi|29668147|gb|CB664422.1|CB664422
genomic: ATGAAGACCTGGAGGATGAGGAAACAGAAAATCCTGAGCTAGCTGCTAAGgtttaatgat ... ctcaatgcagCCTGTTTATGTCAAGGATGACTTTTTTGATTCCCTCACTAGTGGAACATTT
EST: ATGAAGACCTGGAGGATGAGGAAACAGAAAATCCTGAGCTAGCTGCTAAG CCTGTTTATGTCAAGGATGACTTTTTTGATTCCCTCACTAGTGGAACATTTEST: gi|29668148|gb|CB664423.1|CB664423
genomic: ATGAAGACCTGGAGGATGAGGAAACAGAAAATCCTGAGCTAGCTGCTAAGgtttaatgat ... ctcaatgcagCCTGTTTATGTCAAGGATGACTTTTTTGATTCCCTCACTAGTGGAACATTT
EST: ATGAAGACCTGGAGGATGAGGAAACAGAAAATCCTGAGCTAGCTGCTAAG CCTGTTTATGTCAAGGATGACTTTTTTGATTCCCTCACTAGTGGAACATTTEST: gi|29638812|gb|CB643821.1|CB643821
genomic: ATGAAGACCTGGAGGATGAGGAAACAGAAAATCCTGAGCTAGCTGCTAAGgtttaatgat ... ctcaatgcagCCTGTTTATGTCAAGGATGACTTTTTTGATTCCCTCACTAGTGGAACATTT
EST: ATGAAGACCTGGAGGATGAGGAAACAGAAAATCTTGAGCTAGCTGCTAAG CCTGTTTATGTCAAGGATGACTTTTTTGATTCCCTCACTAGTGGAACATTT
genomic: ATGAAGACCTGGAGGATGAGGAAACAGAAAATCCTGAGCTAGCTGCTAAGgtttaatgat ... ctcaatgcagCCTGTTTATGTCAAGGATGACTTTTTTGATTCCCTCACTAGTGGAACATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAATCCCATTCAAGGGACAAAGATGGTGAGCTGGGCGATGATGTGTTTGATGAAGACCTGGAGGATGAGGAAACAGAAAATCCTGAGCTAGCTGCTAAGgtttaatgataacattttgttggacatagatttggttttgtttgtttcagcaataactaaaacatgtctttcaacctcaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT