1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCTTGGGAACGAAAGCATGGCAGTTGAGGGTTTTGAGGAAGCAATTAAATGCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGGgtagctactacttatccttgtgtactgcctttcatccatgcgctcctatttgtggtgctctcgacgactgacttttatcatgtactgtaatacttttgcag
species | Oryza sativa |
transcript | LOC_Os01g01420.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCACTCTTGAGCAGCGG CGTCTCTCGGTTCTCGACTTTCTACAAAAACAATTGGATGACAAGTGATATEST: gi|88260697|gb|CI362990.1|CI362990
genomic: CCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGGgtagctacta ... acttttgcagCGTCTCTCGGTTCTCGACTTTCTACAAAAACAATTGGATGACAAGTGATAT
EST: GTCTTGAGCAGCGG CGTCTCTCGGTTCTCGACTTTCTACAAAAACAATTGGATGACAAGTGATATEST: gi|86597810|gb|CI276596.1|CI276596
genomic: GTCTTGAGCAGCGGgtagctacta ... acttttgcagCGTCTCTCGGTTCTCGACTTTCTACAAAAACAATTGGATGACAAGTGATAT
EST: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGG CGTCTCTCGGTTCTCGACTTTCTACAAAAACAATTGGATGACAAGTGATATEST: gi|23513969|gb|BU673403.1|BU673403
genomic: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGGgtagctacta ... acttttgcagCGTCTCTCGGTTCTCGACTTTCTACAAAAACAATTGGATGACAAGTGATAT
EST: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGG CGTCTCTCGGTTCTCGACTTTCTACAAAAACAATTGGATGACAAGTGATATEST: gi|88996416|gb|CI259920.1|CI259920
genomic: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGGgtagctacta ... acttttgcagCGTCTCTCGGTTCTCGACTTTCTACAAAAACAATTGGATGACAAGTGATAT
EST: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGG CGTCTCTCGGTTCTCGACTTTCTACAAAAACAATTGGATGACAAGTGATATEST: gi|29628499|gb|CB633510.1|CB633510
genomic: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGGgtagctacta ... acttttgcagCGTCTCTCGGTTCTCGACTTTCTACAAAAACAATTGGATGACAAGTGATAT
EST: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGG CGTCTCTCGGTTCTCGACTTTCTACAAAAACAATTGGATGACAAGTGATATEST: gi|88531546|gb|CI460028.1|CI460028
genomic: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGGgtagctacta ... acttttgcagCGTCTCTCGGTTCTCGACTTTCTACAAAAACAATTGGATGACAAGTGATAT
EST: AATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGG CGTCTCTCGGTTCTCGACTTTCTACAAAAACAATTGGATGACAAGTGATATEST: gi|88560349|gb|CI491003.1|CI491003
genomic: AATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGGgtagctacta ... acttttgcagCGTCTCTCGGTTCTCGACTTTCTACAAAAACAATTGGATGACAAGTGATAT
EST: AGTCTTGAGCAGCGG CGTCTCTCGGTTCTCGACTTTCTACAAAAACAATTGGATGACAAGTGATATEST: gi|89190253|gb|CI392303.1|CI392303
genomic: AGTCTTGAGCAGCGGgtagctacta ... acttttgcagCGTCTCTCGGTTCTCGACTTTCTACAAAAACAATTGGATGACAAGTGATAT
EST: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCACTCTTGAGCAGCGG CGTCTCTCGGTTCTCGACTTTCTACAAAAACAATTGGATGACAAGTGATATEST: gi|88663803|gb|CI486749.1|CI486749
genomic: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGGgtagctacta ... acttttgcagCGTCTCTCGGTTCTCGACTTTCTACAAAAACAATTGGATGACAAGTGATAT
EST: CTTGAGCAGCGG CGTCTCTCGGTTCTCGACTTTCTACAAAAACAATTGGATGACAAGTGATATEST: gi|88849918|gb|CI001624.1|CI001624
genomic: CTTGAGCAGCGGgtagctacta ... acttttgcagCGTCTCTCGGTTCTCGACTTTCTACAAAAACAATTGGATGACAAGTGATAT
EST: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGG CGTCTCTCGGTTCTCGACTTTCTACAAAAACAATTGGATGACAAGTGATATEST: gi|88252353|gb|CI350781.1|CI350781
genomic: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGGgtagctacta ... acttttgcagCGTCTCTCGGTTCTCGACTTTCTACAAAAACAATTGGATGACAAGTGATAT
EST: AGAATTTGAAGCTGGAATCTGGAGAGGCCACTCTTGAGCAGCGG CGTCTCTCGATTCTCGACTTTCTACAAAAACAATTGGATGACAGGTGATATEST: gi|89181635|gb|CI113141.1|CI113141
genomic: AGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGGgtagctacta ... acttttgcagCGTCTCTCGGTTCTCGACTTTCTACAAAAACAATTGGATGACAAGTGATAT
EST: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGG CGTCTCTCGGTTCTCGACTTTCTACAAAAACAATTGGATGACAAGTGATATEST: gi|29637602|gb|CB642611.1|CB642611
genomic: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGGgtagctacta ... acttttgcagCGTCTCTCGGTTCTCGACTTTCTACAAAAACAATTGGATGACAAGTGATAT
EST: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGG CGTCTCTCGGTTCTCGACTTTCTACAAAAACAATTGGATGACAAGTGATATEST: gi|86435733|gb|CI106966.1|CI106966
genomic: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGGgtagctacta ... acttttgcagCGTCTCTCGGTTCTCGACTTTCTACAAAAACAATTGGATGACAAGTGATAT
EST: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGG CGTCTCTCGGTTCTCGACTTTCTACAAAAACAATTGGATGACAAGTGATATEST: gi|86864492|gb|CI334767.1|CI334767
genomic: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGGgtagctacta ... acttttgcagCGTCTCTCGGTTCTCGACTTTCTACAAAAACAATTGGATGACAAGTGATAT
EST: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGG CGTCTCTCGGTTCTCGACTTTCTACAAAAACAATTGGATGACAAGTGATATEST: gi|86903234|gb|CI313597.1|CI313597
genomic: GCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGGgtagctacta ... acttttgcagCGTCTCTCGGTTCTCGACTTTCTACAAAAACAATTGGATGACAAGTGATAT
EST: CCTTGAGAATTTTAAGGCTGGAATCTGGAGAGGCCAGTCTTGAGCACCGG CGTCTCTCGGTTCTCGACTTTCTACAAAAACAATTGGATGACAAGTGATATEST: gi|88509567|gb|CI437073.1|CI437073
genomic: CCTTGAGAATTTGAA-GCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGGgtagctacta ... acttttgcagCGTCTCTCGGTTCTCGACTTTCTACAAAAACAATTGGATGACAAGTGATAT
EST: TTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGG CGTCTCTCGGTTCTCGACTTTCTACAAAAACAATTGGATGACAAGTGATAT
genomic: TTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGGgtagctacta ... acttttgcagCGTCTCTCGGTTCTCGACTTTCTACAAAAACAATTGGATGACAAGTGATAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTGGGAACGAAAGCATGGCAGTTGAGGGTTTTGAGGAAGCAATTAAATGCCTTGAGAATTTGAAGCTGGAATCTGGAGAGGCCAGTCTTGAGCAGCGGgtagctactacttatccttgtgtactgcctttcatccatgcgctcctatttgtggtgctctcgacgactgacttttatcatgtactgtaatacttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG