1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTACCCAAAAGATTCCGAGAAGTTAATGCTTGCTAGGCAGACTGGCCTGACTAGGAGTCAGgtaaatattgtttatcttttttgtgcactggaccattgatccacatttgatgttttaacttcttatcctagaagcattttgtgtttcttcaagagttcaacatgttgactgcttcatgcttctcctgttctccag
species | Oryza sativa |
transcript | LOC_Os12g43950.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTAGGAGGTCAG ATTTCGAATTGGTTCATAAATGCCCCTGTCCCCCTTTGGAAACCAATGATEST: gi|32948164|gb|BP184736.1|BP184736
genomic: CTAGGA-GTCAGgtaaatattg ... tgttctccagATTTCGAATTGGTTCATAAATGCCCGTGTCCGCCTTTGGAAACCAATGAT
EST: ATTCCGAGAAGTTAATGCTTGCTAGGCAGACTGGCCTGACTAGGAGTCAG ATTTCGAATTGGTTCATAAATGCCCGTGTCCGCCTTTGGAAACCAATGATTEST: gi|29662888|gb|CB659163.1|CB659163
genomic: ATTCCGAGAAGTTAATGCTTGCTAGGCAGACTGGCCTGACTAGGAGTCAGgtaaatattg ... tgttctccagATTTCGAATTGGTTCATAAATGCCCGTGTCCGCCTTTGGAAACCAATGATT
EST: ATTCCGAGAAGTTAATGCTTGCTAAGCATACTGGCCTGACTAGGAGTCAT ATTTCGAATTGGTTCATAAATGCCCGTGTCCGCCTTTGGAAACCAATGATT
genomic: ATTCCGAGAAGTTAATGCTTGCTAGGCAGACTGGCCTGACTAGGAGTCAGgtaaatattg ... tgttctccagATTTCGAATTGGTTCATAAATGCCCGTGTCCGCCTTTGGAAACCAATGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACCCAAAAGATTCCGAGAAGTTAATGCTTGCTAGGCAGACTGGCCTGACTAGGAGTCAGgtaaatattgtttatcttttttgtgcactggaccattgatccacatttgatgttttaacttcttatcctagaagcattttgtgtttcttcaagagttcaacatgttgactgcttcatgcttctcctgttctccag
- - - - - - - - AGAAGT