Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTTGCAGTGGAGGGGCAAGTGAAAGAGAAGAGTCGTTGGTGTCAGTTGCTGAACGATTTGAGTGAGAAATTTAAGgtaactggtttcatattcaaagtttgtttactactcatgtacaaatagcacaattgtctgggaagtcaaagcagcatattttattttattttcaaaaaaaaccacag

Basic information

species Oryza sativa
transcript LOC_Os12g42160.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g42160.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G400223_T03 (Zea mays), 5'ss of exon 3
CATTTGCAGTGGAGGGGCAAGTGAAAGAGAAGAGTCGTTGGTGTCAGTTGCTGAACGATTTGAGTGAGAAATTTAAGgtaactggtttcatattcaaagtttgtttactactcatgtacaaatagcacaattgtctgggaagtcaaagcagcatattttattttattttcaaaaaaaaccacag
| | |||||| || ||||||||||||||||||||||||| |||||| || ||||| || ||||| || ||||||| ||||      ||| | |  |||   | ||    |||    |   ||    |      | |  ||  ||  |   |    | | ||  || || |||  | |  ||   
CCTCTGCAGTTGAAGGGCAAGTGAAAGAGAAGAGTCGTTTGTGTCAATTACTGAAAGAATTGAGCGAAAAATTTATGgta------ttcctctaaaaaacattttacacacttgcct-tgaactttatg-ccatataagatatctcatatgtg-gtctgatactaattacaatcatatgcag--