1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
CCTGGTCCGGATTCCATTGGAATCATCGCTGTTTCGCACAATTGCAGTGGCGTAGCAGCACGAGCTTGCGGCCTGGTGAGCCTTGAGCCCACAAAGgtatgatttgttttccttgatattgtgttacatttcccattaactggcatgctacagaccctgataagcttcattttag
species | Oryza sativa |
transcript | LOC_Os12g41860.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTGGCGTAGCAGCACGAGCTTGCGGCCTTGTGAGCCTTGAGCCCACAAAG GTTGCGGAGATCCTCAAGGATCGCCCCTCTTGGTACCGTGATTGCCGATGCEST: gi|58661675|gb|CK050355.1|CK050355
genomic: GTGGCGTAGCAGCACGAGCTTGCGGCCTGGTGAGCCTTGAGCCCACAAAGgtatgatttg ... ttcattttagGTTGCAGAGATCCTCAAGGATCGCCCCTCTTGGTACCGTGATTGCCGATGC
EST: GTGGCGTAGCAGCACGAGCTTGCGGCCTTGTGAGCCTTGAGCCCACAAAG GTTGCGGAGATCCTCAAGGATCGCCCCTCTTGGTACCGTGATTGCCGATGCEST: gi|58654155|gb|CK042835.1|CK042835
genomic: GTGGCGTAGCAGCACGAGCTTGCGGCCTGGTGAGCCTTGAGCCCACAAAGgtatgatttg ... ttcattttagGTTGCAGAGATCCTCAAGGATCGCCCCTCTTGGTACCGTGATTGCCGATGC
EST: GTGGCGTAGCAGCACGAGCTTGCGGCCTTGTGAGCCTTGAGCCCACAAAG GTTGCGGAGATCCTCAAGGATCGCCCCTCTTGGTACCGTGATTGCCGATGCEST: gi|58675209|gb|CK063896.1|CK063896
genomic: GTGGCGTAGCAGCACGAGCTTGCGGCCTGGTGAGCCTTGAGCCCACAAAGgtatgatttg ... ttcattttagGTTGCAGAGATCCTCAAGGATCGCCCCTCTTGGTACCGTGATTGCCGATGC
EST: GTGGCGTAGCAGCACGAGCTTGCGGCCTTGTGAGCCTTGAGCCCACAAAG GTTGCGGAGATCCTCAAGGATCGCCCCTCTTGGTACCGTGATTGCCGATGCEST: gi|58675501|gb|CK064188.1|CK064188
genomic: GTGGCGTAGCAGCACGAGCTTGCGGCCTGGTGAGCCTTGAGCCCACAAAGgtatgatttg ... ttcattttagGTTGCAGAGATCCTCAAGGATCGCCCCTCTTGGTACCGTGATTGCCGATGC
EST: GTGGCGTAGCAGCACGAGCTTGCGG-CTTGTGAGCCTTGAGCCCACAAAG GTTGCGGAGATCCTCAAGGATCGCCCCTCTTGGTACCGTGATTGCCGATGCEST: gi|58609674|gb|CK037707.1|CK037707
genomic: GTGGCGTAGCAGCACGAGCTTGCGGCCTGGTGAGCCTTGAGCCCACAAAGgtatgatttg ... ttcattttagGTTGCAGAGATCCTCAAGGATCGCCCCTCTTGGTACCGTGATTGCCGATGC
EST: GTGGCGTAGCAGCACGAGCTTGCGGGCTTGTGAGCCTTGAGCCCACAAAG GTTGCGGAGATCCT
genomic: GTGGCGTAGCAGCACGAGCTTGCGGCCTGGTGAGCCTTGAGCCCACAAAGgtatgatttg ... ttcattttagGTTGCAGAGATCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTGGTCCGGATTCCATTGGAATCATCGCTGTTTCGCACAATTGCAGTGGCGTAGCAGCACGAGCTTGCGGCCTGGTGAGCCTTGAGCCCACAAAGgtatgatttgttttccttgatattgtgttacatttcccattaactggcatgctacagaccctgataagcttcattttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT