1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TACAACTACCTTGGTATACTACTTGAAGGGCGTGAAAGATTTGAAGAGGAAGCTATAGCTGACAGAAGAACTACCTGCCAAAGTGATCCTTCTAGCTCTGgtatgacagtcgtattattatgttcttttggctatccaccttaattctttgctgcataaattcacatatttatatcagcaggagacttgcaattgtttgattttagtgaaacatatagactgctagcctcttccacagaccatctagaatttatttttgtgtttcttttgcag
species | Oryza sativa |
transcript | LOC_Os12g40190.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGCTATAGCTGACAGAAGAACTACCTGCCAAAGTGATCCTTCTAGCTCTG GCCATTGTGAACCAGAGCTTTGTAATGACATTACTGAGTACTATATTGCTCEST: gi|218493725|gb|FG959876.1|FG959876
genomic: AGCTATAGCTGACAGAAGAACTACCTGCCAAAGTGATCCTTCTAGCTCTGgtatgacagt ... tcttttgcagGCCATTGTGAACCAGAGCTTTGTAATGACATTACTGAGTACTATATTGCTC
EST: AGCTATAGCTGACAGAAGAACTACCTGCCAAAGTGATCCTTCTAGCTCTG GCCATTGTGAACCAGAGCTTTGTAATGACATTACTGAGTACTATATTGCTCEST: gi|29655973|gb|CB652248.1|CB652248
genomic: AGCTATAGCTGACAGAAGAACTACCTGCCAAAGTGATCCTTCTAGCTCTGgtatgacagt ... tcttttgcagGCCATTGTGAACCAGAGCTTTGTAATGACATTACTGAGTACTATATTGCTC
EST: AGCTATAGCTGACAGAAGAACTACCTGCCAAAGTGATCCTTCTAGCTCTG GCCATTGTGAACCAGAGCTTTGTAATGACATTACTGAGTACTATATTGCTCEST: gi|58687787|gb|CK076474.1|CK076474
genomic: AGCTATAGCTGACAGAAGAACTACCTGCCAAAGTGATCCTTCTAGCTCTGgtatgacagt ... tcttttgcagGCCATTGTGAACCAGAGCTTTGTAATGACATTACTGAGTACTATATTGCTC
EST: AGCTATAGCTGACAGAAGAACTACCTGCCAAAGTGATCCTTCTAGCTCTG GCCATTGTGAACCAGAGCTTTGTAATGACATTACTGAGTACTATATTGCTC
genomic: AGCTATAGCTGACAGAAGAACTACCTGCCAAAGTGATCCTTCTAGCTCTGgtatgacagt ... tcttttgcagGCCATTGTGAACCAGAGCTTTGTAATGACATTACTGAGTACTATATTGCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACAACTACCTTGGTATACTACTTGAAGGGCGTGAAAGATTTGAAGAGGAAGCTATAGCTGACAGAAGAACTACCTGCCAAAGTGATCCTTCTAGCTCTGgtatgacagtcgtattattatgttcttttggctatccaccttaattctttgctgcataaattcacatatttatatcagcaggagacttgcaattgtttgattttagtgaaacatatagactgctagcctcttccacagaccatctagaatttatttttgtgtttcttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC