1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TCCTTGAGATGAATCCGTTCACCATGGTGAATGGGGAACCATATCCTCTAGACATGAGAGGAGAATTGGACGACACAGCTGCCTTTAAGAACTTTAAGAAgtatgattcaggcttttttttttctagcttacatagtgtccagttcaatcctttcaccatgcttgtcatgctaaccagagcttccatggcatag
species | Oryza sativa |
transcript | LOC_Os12g37870.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GACATGAGAGGAGAATTGGACGACACAGCTGCCTTTAAGAACTTTAAGAA GTGGGGAAACATTCAGTTCCCTCTGCCTTTCGGAAGAGTCCTCAGCCCCTCEST: gi|33807858|gb|CF329821.1|CF329821
genomic: GACATGAGAGGAGAATTGGACGACACAGCTGCCTTTAAGAACTTTAAGAAgtatgattca ... catggcatagGTGGGGAAACATTCAGTTCCCTCTGCCTTTCGGAAGAGTCCTCAGCCCCTC
EST: GACATGAGAGGAGAATTGGACGACACAGCTGCCTTTAAGAACTTTAAGAA GTGGGGAAACATTCAGTTCCCTCTGCCTTTCGGAAGAGTCCTCAGCCCCTCEST: gi|29669993|gb|CB666268.1|CB666268
genomic: GACATGAGAGGAGAATTGGACGACACAGCTGCCTTTAAGAACTTTAAGAAgtatgattca ... catggcatagGTGGGGAAACATTCAGTTCCCTCTGCCTTTCGGAAGAGTCCTCAGCCCCTC
EST: GACATGAGAGGAGAATTGGACGACACAGCTGCCTTTAAGAACTTTAAGAA GTGGGGAAACATTCAGTTCCCTCTGCCTTTCGGAAGAGTCCTCAGCCCCTCEST: gi|58600487|gb|CK011015.1|CK011015
genomic: GACATGAGAGGAGAATTGGACGACACAGCTGCCTTTAAGAACTTTAAGAAgtatgattca ... catggcatagGTGGGGAAACATTCAGTTCCCTCTGCCTTTCGGAAGAGTCCTCAGCCCCTC
EST: GACATGAGAGGAGAATTGGACGACACAGCTGCCTTTAAGAACTTTAAGAA GTGGGGAAACATTCAGTTCCCTCTGCCTTTCGGAAGAGTCCTCAGCCCCTCEST: gi|29638061|gb|CB643070.1|CB643070
genomic: GACATGAGAGGAGAATTGGACGACACAGCTGCCTTTAAGAACTTTAAGAAgtatgattca ... catggcatagGTGGGGAAACATTCAGTTCCCTCTGCCTTTCGGAAGAGTCCTCAGCCCCTC
EST: ACATGAGAGGAGAATTGGACGACACAGCTGCCTTTAAGAACTTTAAGAA GTGGGGAAACATTCAGTTCCCTCTGCCTTTCGGAAGAGTCCTCAGCCCCTCEST: gi|33800763|gb|CF326252.1|CF326252
genomic: ACATGAGAGGAGAATTGGACGACACAGCTGCCTTTAAGAACTTTAAGAAgtatgattca ... catggcatagGTGGGGAAACATTCAGTTCCCTCTGCCTTTCGGAAGAGTCCTCAGCCCCTC
EST: GACATGAGAGGAGAATTGGACGACACAGCTGCCTTTAAGAACTTTAAGAA GTGGGGAAACATTCAGTTCCCTCTGCCTTTCGGAAGAGTCCTCAGCCCCTCEST: gi|58589196|gb|CF987504.1|CF987504
genomic: GACATGAGAGGAGAATTGGACGACACAGCTGCCTTTAAGAACTTTAAGAAgtatgattca ... catggcatagGTGGGGAAACATTCAGTTCCCTCTGCCTTTCGGAAGAGTCCTCAGCCCCTC
EST: GACATGAGAGGAGAATTGGACGACACAGCTGCCTTTAAGAACTTTAAGAA GTGGGGAAACATTCAGTTCCCTCTGCCTTTCGGAAGAGTCCTCAGCCCCTC
genomic: GACATGAGAGGAGAATTGGACGACACAGCTGCCTTTAAGAACTTTAAGAAgtatgattca ... catggcatagGTGGGGAAACATTCAGTTCCCTCTGCCTTTCGGAAGAGTCCTCAGCCCCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTTGAGATGAATCCGTTCACCATGGTGAATGGGGAACCATATCCTCTAGACATGAGAGGAGAATTGGACGACACAGCTGCCTTTAAGAACTTTAAGAAgtatgattcaggcttttttttttctagcttacatagtgtccagttcaatcctttcaccatgcttgtcatgctaaccagagcttccatggcatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC