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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAGAGGTGTGCTCTTCCTTCGGTTCCTGCCATCTTTAGTTGATGAGTCAGAGAAGATAAGGCATTTGGCAGACTTCCTTTTTGGGAACATCTTGAAAGgtttaccctgcgttctgttttatcttttacttgattttttttatttgaaatttgaaaaaaattgtggccacacgttttcttttttcttgggaaagtcaagcactcaagttctttttctgaaggatttaccccctttctgtgttatctgtctaatgttgacataaattttgcag

Basic information

species Oryza sativa
transcript LOC_Os12g36170.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g36170.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G571844_T01 (Zea mays), 5'ss of exon 4
TGGAGAGGTGTGCTCTTCCTTCGGTTCCTGCCATCTTTAGTTGATGAGTCAGAGAAGATAAGGCATTTGGCAGACTTCCTTTTTGGGAACATCTTGAAAGgtttaccctgcgttctgttttatcttttacttgattttttttatttga--aatttgaaaaaaattgtggccacacgttttcttttttcttgggaaagtcaagcactcaagttctttttctgaaggatttaccccctttctgtgttatctgtctaatgttgacataaattttgcag
|||||||| || ||||||||||| || ||||||||||||||||||||||| |||||||| ||||||||||| |||| ||| || ||||||||||| |||||| |    |   || |||  ||   |||   |  ||||    |  |||  ||  ||    || |    |    || | | |||   | |||                                                                                    
TGGAGAGGGGTTCTCTTCCTTCGATTTCTGCCATCTTTAGTTGATGAGTCTGAGAAGATTAGGCATTTGGCGGACTACCTCTTCGGGAACATCTTAAAAGgtat----ttatttttgtactaaactttttcttgttttaagcaactgactaacatgtcccaagtcactgattaacatctgcttaaattttgcag---------------------------------------------------------------------------------

upper sequence: LOC_Os12g36170.1 (Oryza sativa), 5'ss of exon 5
lower sequence: Vv05s0020g01160.t01 (Vitis vinifera), 5'ss of exon 6
TGGAGAGGTGTGCTCTTCCTTCGGTTCCTGCCATCTTTAGTTGATGAGTCAGAGAAGATAAGGCATTTGGCAGACTTCCTTTTTGGGAACATCTTGAAAGgtttaccctgcgttctgttttatcttttacttgattttttttatttgaaatttgaaaaaaattgtggccacacgttttcttttttcttgggaaagtcaagcactcaagttctttttctgaaggatttaccccctttctgtgttatctgtctaatgttgacataaattttgcag
|||||||| || |||||||| || |||||   |||| | |||||||| |||||  |||||||||   | ||||| ||||| |||||||| ||||||||||||| || ||||      ||||| |  |||||  || | | |  |        || ||| |||  |         || | ||| | |   |  || ||     || | ||  ||    || ||                                                   
TGGAGAGGAGTACTCTTCCTCCGATTCCTTTTATCTCTTGTTGATGAATCAGAAGAGATAAGGCGGCTTGCAGATTTCCTCTTTGGGAATATCTTGAAAGgtt-acactgc------tttta-cagttact-aatctatctcgtca------tggaaacaatgat---------ttatgtttatccagagtgaattcttcatctgatgtgtttggattgcag---------------------------------------------------