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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTCCTGTGCAAGCGGTTCCATCATTCCCTTCTTCATTTCCACATCTCTTCTCTGGGAATGACCAACTACGGTGCTTAATCCCATGTGCAATAGACCAGgtataaacatatctgggctccctgattccatttctccctgtgaatttgtggtttggctgcctttccatgctgctatcatgccatttcgtctaggaacaca...

Basic information

species Oryza sativa
transcript LOC_Os12g35570.3
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g35570.3 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G002687_T01 (Zea mays), 5'ss of exon 5
TCCTCCTGTGCAAGCGGTTCCATCATTCCCTTCTTCATTTCCACATCTCTTCTCTGGGAATGACCAACTACGGTGCTTAATCCCATGTGCAATAGACCAGgtataaacatatctgggctccctgattccatttctccctgtgaatttgtg---gtttggctgcctttccatgctgctatcatgccatttcgtctaggaacaca
|||||| ||||| || || ||||||||||||||||||||||| ||||||||| |||| || |||||||| |||||  | ||||||||||||||||| |||||| |||||| | |||       |  |  | |  |    |||| | | |      |||   || |     |  |  | |  |     |   | |  ||||   
TCCTCCAGTGCAGGCAGTCCCATCATTCCCTTCTTCATTTCCCCATCTCTTCGCTGGCAAGGACCAACTGCGGTGTCTTATCCCATGTGCAATAGATCAGgtacaaacatctttggtaaaatggtctttactagtataagtgattgtatataaacttgctagcatacttgtaatatttttgttagtgtaaatttctgaac---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27576171|gb|CA998865.1|CA998865
EST:     TCTCTGGGAATGACCAACTACGGTGCTTAATCCCATGTGCAATAGACCAG                         GATCCTTATTTCAGGATGACCCGGGACGTTGCTCCAAGAATTGGTTACCAG
genomic: TCTCTGGGAATGACCAACTACGGTGCTTAATCCCATGTGCAATAGACCAGgtataaacat ... gttcttccagGATCCTTATTTCAGGATGACCCGGGACGTTGCTCCAAGAATTGGTTACCAG
EST: gi|117242702|gb|CT843523.1|CT843523
EST:     TCTCTGGGAATGACCAACTACGGTGCTTAATCCCATGTGCAATAGACCAG                         GATCCTTATTTCAGGATGACCCGGGACGTTGCTCCAAGAATTGGTTACCAG
genomic: TCTCTGGGAATGACCAACTACGGTGCTTAATCCCATGTGCAATAGACCAGgtataaacat ... gttcttccagGATCCTTATTTCAGGATGACCCGGGACGTTGCTCCAAGAATTGGTTACCAG
EST: gi|29674926|gb|CB671201.1|CB671201
EST:     TCCCATGTGCAATAGACCAG                         GATCCTTATTTCAGGATGACCCGGGACGTTGCTCCAAGAATTGGTTACCAG
genomic: TCCCATGTGCAATAGACCAGgtataaacat ... gttcttccagGATCCTTATTTCAGGATGACCCGGGACGTTGCTCCAAGAATTGGTTACCAG