1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGAAAATGGAAGTGTGGAACCAAACAAAGAAGTCATAGAAAAAGgtatgccataaccttttctttaaaaaaaaaactgactttaatgttgtaagtactagtaatgttgatttcttgcagatcagatcctagttcttaactctgccaatttcag
species | Oryza sativa |
transcript | LOC_Os12g31850.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGAAAATGGAAGTGTGGAACCAAACAAAGAAGTCATAGAAAAAG ATGCTCCCAAGGACTTGGAGAATGGAGCTTCTGCAACCAAATATEST: gi|218501335|gb|FG958585.1|FG958585
genomic: GGAAAATGGAAGTGTGGAACCAAACAAAGAAGTCATAGAAAAAGgtatgccata ... ccaatttcagATGCTCCCAAGGACTTGGAGAATGGAGCTTCTGCAACCAAATAT
EST: GGAAAATGGAAGTGTGGAACCAAACAAAGAAGTCATAGAAAAAG ATGCTCCCAAGGACTTGGAGAATGGAGCTTCTGCAACCAAATATGTTGCCAEST: gi|29614658|gb|CB619671.1|CB619671
genomic: GGAAAATGGAAGTGTGGAACCAAACAAAGAAGTCATAGAAAAAGgtatgccata ... ccaatttcagATGCTCCCAAGGACTTGGAGAATGGAGCTTCTGCAACCAAATATGTTGCCA
EST: GGAAAATGGAAGTGTGGAACCAAACAAAGAAGTCATAGAAAAAG ATGCTCCCAAGGACTTGGAGAATGGAGCTTCTGCAACCAAATATGTTGCCAEST: gi|29665274|gb|CB661549.1|CB661549
genomic: GGAAAATGGAAGTGTGGAACCAAACAAAGAAGTCATAGAAAAAGgtatgccata ... ccaatttcagATGCTCCCAAGGACTTGGAGAATGGAGCTTCTGCAACCAAATATGTTGCCA
EST: GGAAAATGGAAGTGTGGAACCAAACAAAGAAGTCATAGAAAAAG ATGCTCCCAAGGACTTGGAGAATGGAGCTTCTGCAACCAAATATGTTGCCAEST: gi|29614656|gb|CB619669.1|CB619669
genomic: GGAAAATGGAAGTGTGGAACCAAACAAAGAAGTCATAGAAAAAGgtatgccata ... ccaatttcagATGCTCCCAAGGACTTGGAGAATGGAGCTTCTGCAACCAAATATGTTGCCA
EST: GGAAAATGGAAGTGTGGAACCAAACAAAGAAGTCATAGAAAAAG ATGCTCCCAAGGACTTGGAGAATGGAGCTTCTGCAACCAAATATGTTGCCAEST: gi|218483875|gb|FG965316.1|FG965316
genomic: GGAAAATGGAAGTGTGGAACCAAACAAAGAAGTCATAGAAAAAGgtatgccata ... ccaatttcagATGCTCCCAAGGACTTGGAGAATGGAGCTTCTGCAACCAAATATGTTGCCA
EST: AGTCATAGAAAAAG ATGCTCCCAAGGACTTGGAGAATGGAGCTTCTGCAACCAAATATGTTGCCA
genomic: AGTCATAGAAAAAGgtatgccata ... ccaatttcagATGCTCCCAAGGACTTGGAGAATGGAGCTTCTGCAACCAAATATGTTGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAAATGGAAGTGTGGAACCAAACAAAGAAGTCATAGAAAAAGgtatgccataaccttttctttaaaaaaaaaactgactttaatgttgtaagtactagtaatgttgatttcttgcagatcagatcctagttcttaactctgccaatttcag
- - - TGGAAG
- - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - AGAAGT